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Results: 1 to 20 of 89

1.

Escherichia coli K-12: a cooperatively developed annotation snapshot--2005.

Riley M, Abe T, Arnaud MB, Berlyn MK, Blattner FR, Chaudhuri RR, Glasner JD, Horiuchi T, Keseler IM, Kosuge T, Mori H, Perna NT, Plunkett G 3rd, Rudd KE, Serres MH, Thomas GH, Thomson NR, Wishart D, Wanner BL.

Nucleic Acids Res. 2006 Jan 5;34(1):1-9. Print 2006.

PMID:
16397293
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

The applications of systematic in-frame, single-gene knockout mutant collection of Escherichia coli K-12.

Baba T, Huan HC, Datsenko K, Wanner BL, Mori H.

Methods Mol Biol. 2008;416:183-94. doi: 10.1007/978-1-59745-321-9_12.

PMID:
18392968
[PubMed - indexed for MEDLINE]
3.

Multidimensional annotation of the Escherichia coli K-12 genome.

Karp PD, Keseler IM, Shearer A, Latendresse M, Krummenacker M, Paley SM, Paulsen I, Collado-Vides J, Gama-Castro S, Peralta-Gil M, Santos-Zavaleta A, Peñaloza-Spínola MI, Bonavides-Martinez C, Ingraham J.

Nucleic Acids Res. 2007;35(22):7577-90. Epub 2007 Oct 16.

PMID:
17940092
[PubMed - indexed for MEDLINE]
Free PMC Article
4.
5.

Complete genome sequence and comparative analysis of the wild-type commensal Escherichia coli strain SE11 isolated from a healthy adult.

Oshima K, Toh H, Ogura Y, Sasamoto H, Morita H, Park SH, Ooka T, Iyoda S, Taylor TD, Hayashi T, Itoh K, Hattori M.

DNA Res. 2008 Dec;15(6):375-86. doi: 10.1093/dnares/dsn026. Epub 2008 Oct 17.

PMID:
18931093
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

The nature and dynamics of bacterial genomes.

Ochman H, Davalos LM.

Science. 2006 Mar 24;311(5768):1730-3. Review.

PMID:
16556833
[PubMed - indexed for MEDLINE]
7.

EchoBASE: an integrated post-genomic database for Escherichia coli.

Misra RV, Horler RS, Reindl W, Goryanin II, Thomas GH.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D329-33.

PMID:
15608209
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

A functional update of the Escherichia coli K-12 genome.

Serres MH, Gopal S, Nahum LA, Liang P, Gaasterland T, Riley M.

Genome Biol. 2001;2(9):RESEARCH0035. Epub 2001 Aug 20.

PMID:
11574054
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Genome-wide expression analysis indicates that FNR of Escherichia coli K-12 regulates a large number of genes of unknown function.

Kang Y, Weber KD, Qiu Y, Kiley PJ, Blattner FR.

J Bacteriol. 2005 Feb;187(3):1135-60.

PMID:
15659690
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

MultiFun, a multifunctional classification scheme for Escherichia coli K-12 gene products.

Serres MH, Riley M.

Microb Comp Genomics. 2000;5(4):205-22.

PMID:
11471834
[PubMed - indexed for MEDLINE]
11.

Global gene expression profiling in Escherichia coli K12: effects of oxygen availability and ArcA.

Salmon KA, Hung SP, Steffen NR, Krupp R, Baldi P, Hatfield GW, Gunsalus RP.

J Biol Chem. 2005 Apr 15;280(15):15084-96. Epub 2005 Feb 7.

PMID:
15699038
[PubMed - indexed for MEDLINE]
Free Article
12.

Genomic peculiarity of coding sequences and metabolic potential of probiotic Escherichia coli strain Nissle 1917 inferred from raw genome data.

Sun J, Gunzer F, Westendorf AM, Buer J, Scharfe M, Jarek M, Gössling F, Blöcker H, Zeng AP.

J Biotechnol. 2005 May 4;117(2):147-61.

PMID:
15823404
[PubMed - indexed for MEDLINE]
13.

Comparative proteomic and genetic analyses reveal unidentified mutations in Escherichia coli XL1-Blue and DH5α.

Xia XX, Qian ZG, Lee SY.

FEMS Microbiol Lett. 2011 Jan;314(2):119-24. doi: 10.1111/j.1574-6968.2010.02157.x. Epub 2010 Nov 26.

PMID:
21114520
[PubMed - indexed for MEDLINE]
14.

The plasticity of global proteome and genome expression analyzed in closely related W3110 and MG1655 strains of a well-studied model organism, Escherichia coli-K12.

Vijayendran C, Polen T, Wendisch VF, Friehs K, Niehaus K, Flaschel E.

J Biotechnol. 2007 Mar 10;128(4):747-61. Epub 2007 Jan 14.

PMID:
17331609
[PubMed - indexed for MEDLINE]
15.

From the genome sequence to the proteome and back: evaluation of E. coli genome annotation with a 2-D gel-based proteomics approach.

Maillet I, Berndt P, Malo C, Rodriguez S, Brunisholz RA, Pragai Z, Arnold S, Langen H, Wyss M.

Proteomics. 2007 Apr;7(7):1097-106.

PMID:
17366475
[PubMed - indexed for MEDLINE]
16.

Emergent properties of reduced-genome Escherichia coli.

Pósfai G, Plunkett G 3rd, Fehér T, Frisch D, Keil GM, Umenhoffer K, Kolisnychenko V, Stahl B, Sharma SS, de Arruda M, Burland V, Harcum SW, Blattner FR.

Science. 2006 May 19;312(5776):1044-6. Epub 2006 Apr 27.

PMID:
16645050
[PubMed - indexed for MEDLINE]
Free Article
17.

Gene fusions and gene duplications: relevance to genomic annotation and functional analysis.

Serres MH, Riley M.

BMC Genomics. 2005 Mar 9;6:33.

PMID:
15757509
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research.

Kitagawa M, Ara T, Arifuzzaman M, Ioka-Nakamichi T, Inamoto E, Toyonaga H, Mori H.

DNA Res. 2005;12(5):291-9. Epub 2006 Jan 9.

PMID:
16769691
[PubMed - indexed for MEDLINE]
Free Article
19.

Only a small subset of the horizontally transferred chromosomal genes in Escherichia coli are translated into proteins.

Taoka M, Yamauchi Y, Shinkawa T, Kaji H, Motohashi W, Nakayama H, Takahashi N, Isobe T.

Mol Cell Proteomics. 2004 Aug;3(8):780-7. Epub 2004 Apr 28.

PMID:
15115803
[PubMed - indexed for MEDLINE]
Free Article
20.

The recognition and prediction of sigma70 promoters in Escherichia coli K-12.

Li QZ, Lin H.

J Theor Biol. 2006 Sep 7;242(1):135-41. Epub 2006 Apr 17.

PMID:
16603195
[PubMed - indexed for MEDLINE]

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