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Results: 1 to 20 of 235

1.

A regularized discriminative model for the prediction of protein-peptide interactions.

Lehrach WP, Husmeier D, Williams CK.

Bioinformatics. 2006 Mar 1;22(5):532-40. Epub 2006 Jan 5.

PMID:
16397010
[PubMed - indexed for MEDLINE]
Free Article
2.

Predicting protein-peptide interactions via a network-based motif sampler.

Reiss DJ, Schwikowski B.

Bioinformatics. 2004 Aug 4;20 Suppl 1:i274-82.

PMID:
15262809
[PubMed - indexed for MEDLINE]
Free Article
3.

Domain Interaction Footprint: a multi-classification approach to predict domain-peptide interactions.

Schillinger C, Boisguerin P, Krause G.

Bioinformatics. 2009 Jul 1;25(13):1632-9. doi: 10.1093/bioinformatics/btp264. Epub 2009 Apr 17.

PMID:
19376827
[PubMed - indexed for MEDLINE]
Free Article
4.

Prediction of Ras-effector interactions using position energy matrices.

Kiel C, Serrano L.

Bioinformatics. 2007 Sep 1;23(17):2226-30. Epub 2007 Jun 28.

PMID:
17599936
[PubMed - indexed for MEDLINE]
Free Article
5.

Learning to predict protein-protein interactions from protein sequences.

Gomez SM, Noble WS, Rzhetsky A.

Bioinformatics. 2003 Oct 12;19(15):1875-81.

PMID:
14555619
[PubMed - indexed for MEDLINE]
Free Article
6.

Conserved network motifs allow protein-protein interaction prediction.

Albert I, Albert R.

Bioinformatics. 2004 Dec 12;20(18):3346-52. Epub 2004 Jul 9.

PMID:
15247093
[PubMed - indexed for MEDLINE]
Free Article
7.

Regulatory motif finding by logic regression.

Keles S, van der Laan MJ, Vulpe C.

Bioinformatics. 2004 Nov 1;20(16):2799-811. Epub 2004 May 27.

PMID:
15166027
[PubMed - indexed for MEDLINE]
Free Article
8.

Bayesian methods for predicting interacting protein pairs using domain information.

Kim I, Liu Y, Zhao H.

Biometrics. 2007 Sep;63(3):824-33.

PMID:
17825014
[PubMed - indexed for MEDLINE]
9.

An integrative approach for predicting interactions of protein regions.

Schelhorn SE, Lengauer T, Albrecht M.

Bioinformatics. 2008 Aug 15;24(16):i35-41. doi: 10.1093/bioinformatics/btn290.

PMID:
18689837
[PubMed - indexed for MEDLINE]
Free Article
10.

Statistical prediction of protein chemical interactions based on chemical structure and mass spectrometry data.

Nagamine N, Sakakibara Y.

Bioinformatics. 2007 Aug 1;23(15):2004-12. Epub 2007 May 17.

PMID:
17510168
[PubMed - indexed for MEDLINE]
Free Article
11.

Finding linear motif pairs from protein interaction networks: a probabilistic approach.

Leung HC, Siu MH, Yiu SM, Chin FY, Sung KW.

Comput Syst Bioinformatics Conf. 2007;6:111-9.

PMID:
17951817
[PubMed - indexed for MEDLINE]
Free Article
12.

Inferring protein-protein interactions through high-throughput interaction data from diverse organisms.

Liu Y, Liu N, Zhao H.

Bioinformatics. 2005 Aug 1;21(15):3279-85. Epub 2005 May 19.

PMID:
15905281
[PubMed - indexed for MEDLINE]
Free Article
13.

A combined experimental and computational strategy to define protein interaction networks for peptide recognition modules.

Tong AH, Drees B, Nardelli G, Bader GD, Brannetti B, Castagnoli L, Evangelista M, Ferracuti S, Nelson B, Paoluzi S, Quondam M, Zucconi A, Hogue CW, Fields S, Boone C, Cesareni G.

Science. 2002 Jan 11;295(5553):321-4. Epub 2001 Dec 13.

PMID:
11743162
[PubMed - indexed for MEDLINE]
Free Article
14.

Predicting disulfide connectivity from protein sequence using multiple sequence feature vectors and secondary structure.

Song J, Yuan Z, Tan H, Huber T, Burrage K.

Bioinformatics. 2007 Dec 1;23(23):3147-54. Epub 2007 Oct 17.

PMID:
17942444
[PubMed - indexed for MEDLINE]
Free Article
15.

Predicting protein-protein interactions using signature products.

Martin S, Roe D, Faulon JL.

Bioinformatics. 2005 Jan 15;21(2):218-26. Epub 2004 Aug 19.

PMID:
15319262
[PubMed - indexed for MEDLINE]
Free Article
16.

Accurate prediction of HIV-1 drug response from the reverse transcriptase and protease amino acid sequences using sparse models created by convex optimization.

Rabinowitz M, Myers L, Banjevic M, Chan A, Sweetkind-Singer J, Haberer J, McCann K, Wolkowicz R.

Bioinformatics. 2006 Mar 1;22(5):541-9. Epub 2005 Dec 20.

PMID:
16368772
[PubMed - indexed for MEDLINE]
Free Article
17.

A novel structure-based encoding for machine-learning applied to the inference of SH3 domain specificity.

Ferraro E, Via A, Ausiello G, Helmer-Citterich M.

Bioinformatics. 2006 Oct 1;22(19):2333-9. Epub 2006 Jul 26.

PMID:
16870929
[PubMed - indexed for MEDLINE]
Free Article
18.

Predicting protein functions with message passing algorithms.

Leone M, Pagnani A.

Bioinformatics. 2005 Jan 15;21(2):239-47. Epub 2004 Sep 17.

PMID:
15377508
[PubMed - indexed for MEDLINE]
Free Article
19.

Predicting co-complexed protein pairs from heterogeneous data.

Qiu J, Noble WS.

PLoS Comput Biol. 2008 Apr 18;4(4):e1000054. doi: 10.1371/journal.pcbi.1000054.

PMID:
18421371
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Filtering high-throughput protein-protein interaction data using a combination of genomic features.

Patil A, Nakamura H.

BMC Bioinformatics. 2005 Apr 18;6:100.

PMID:
15833142
[PubMed - indexed for MEDLINE]
Free PMC Article

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