Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Results: 1 to 20 of 257

1.

ODB: a database of operons accumulating known operons across multiple genomes.

Okuda S, Katayama T, Kawashima S, Goto S, Kanehisa M.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D358-62.

PMID:
16381886
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

ODB: a database for operon organizations, 2011 update.

Okuda S, Yoshizawa AC.

Nucleic Acids Res. 2011 Jan;39(Database issue):D552-5. doi: 10.1093/nar/gkq1090. Epub 2010 Nov 4.

PMID:
21051344
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Genome alignment, evolution of prokaryotic genome organization, and prediction of gene function using genomic context.

Wolf YI, Rogozin IB, Kondrashov AS, Koonin EV.

Genome Res. 2001 Mar;11(3):356-72.

PMID:
11230160
[PubMed - indexed for MEDLINE]
Free Article
4.

DOOR: a database for prokaryotic operons.

Mao F, Dam P, Chou J, Olman V, Xu Y.

Nucleic Acids Res. 2009 Jan;37(Database issue):D459-63. doi: 10.1093/nar/gkn757. Epub 2008 Nov 6.

PMID:
18988623
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

MycoperonDB: a database of computationally identified operons and transcriptional units in Mycobacteria.

Ranjan S, Gundu RK, Ranjan A.

BMC Bioinformatics. 2006 Dec 18;7 Suppl 5:S9.

PMID:
17254314
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions.

Salgado H, Gama-Castro S, Peralta-Gil M, Díaz-Peredo E, Sánchez-Solano F, Santos-Zavaleta A, Martínez-Flores I, Jiménez-Jacinto V, Bonavides-Martínez C, Segura-Salazar J, Martínez-Antonio A, Collado-Vides J.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D394-7.

PMID:
16381895
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Using functional and organizational information to improve genome-wide computational prediction of transcription units on pathway-genome databases.

Romero PR, Karp PD.

Bioinformatics. 2004 Mar 22;20(5):709-17. Epub 2004 Jan 29.

PMID:
14751985
[PubMed - indexed for MEDLINE]
Free Article
8.

MBGD: a platform for microbial comparative genomics based on the automated construction of orthologous groups.

Uchiyama I.

Nucleic Acids Res. 2007 Jan;35(Database issue):D343-6. Epub 2006 Nov 29.

PMID:
17135196
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Optimal gene partition into operons correlates with gene functional order.

Zaslaver A, Mayo A, Ronen M, Alon U.

Phys Biol. 2006 Sep 18;3(3):183-9.

PMID:
17021382
[PubMed - indexed for MEDLINE]
10.

OperonDB: a comprehensive database of predicted operons in microbial genomes.

Pertea M, Ayanbule K, Smedinghoff M, Salzberg SL.

Nucleic Acids Res. 2009 Jan;37(Database issue):D479-82. doi: 10.1093/nar/gkn784. Epub 2008 Oct 23.

PMID:
18948284
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Operon prediction by comparative genomics: an application to the Synechococcus sp. WH8102 genome.

Chen X, Su Z, Dam P, Palenik B, Xu Y, Jiang T.

Nucleic Acids Res. 2004 Apr 19;32(7):2147-57. Print 2004.

PMID:
15096577
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Nebulon: a system for the inference of functional relationships of gene products from the rearrangement of predicted operons.

Janga SC, Collado-Vides J, Moreno-Hagelsieb G.

Nucleic Acids Res. 2005 May 2;33(8):2521-30. Print 2005.

PMID:
15867197
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

RegPredict: an integrated system for regulon inference in prokaryotes by comparative genomics approach.

Novichkov PS, Rodionov DA, Stavrovskaya ED, Novichkova ES, Kazakov AE, Gelfand MS, Arkin AP, Mironov AA, Dubchak I.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W299-307. doi: 10.1093/nar/gkq531. Epub 2010 Jun 11.

PMID:
20542910
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

miRNAMap: genomic maps of microRNA genes and their target genes in mammalian genomes.

Hsu PW, Huang HD, Hsu SD, Lin LZ, Tsou AP, Tseng CP, Stadler PF, Washietl S, Hofacker IL.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D135-9.

PMID:
16381831
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

RegulonDB (version 2.0): a database on transcriptional regulation in Escherichia coli.

Salgado H, Santos A, Garza-Ramos U, van Helden J, Díaz E, Collado-Vides J.

Nucleic Acids Res. 1999 Jan 1;27(1):59-60.

PMID:
9847141
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

DOOR 2.0: presenting operons and their functions through dynamic and integrated views.

Mao X, Ma Q, Zhou C, Chen X, Zhang H, Yang J, Mao F, Lai W, Xu Y.

Nucleic Acids Res. 2014 Jan;42(Database issue):D654-9. doi: 10.1093/nar/gkt1048. Epub 2013 Nov 7.

PMID:
24214966
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Computational prediction of operons in Synechococcus sp. WH8102.

Chen X, Su Z, Xu Y, Jiang T.

Genome Inform. 2004;15(2):211-22.

PMID:
15706507
[PubMed - indexed for MEDLINE]
18.

The UCSC Archaeal Genome Browser.

Schneider KL, Pollard KS, Baertsch R, Pohl A, Lowe TM.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D407-10.

PMID:
16381898
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

SwissRegulon: a database of genome-wide annotations of regulatory sites.

Pachkov M, Erb I, Molina N, van Nimwegen E.

Nucleic Acids Res. 2007 Jan;35(Database issue):D127-31. Epub 2006 Nov 27.

PMID:
17130146
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

A universal operon predictor for prokaryotic genomes.

Li G, Che D, Xu Y.

J Bioinform Comput Biol. 2009 Feb;7(1):19-38.

PMID:
19226658
[PubMed - indexed for MEDLINE]

Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Write to the Help Desk