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Results: 1 to 20 of 315

1.

The helix-coil transition in heterogeneous double stranded DNA: microcanonical method.

Badasyan AV, Grigoryan AV, Mamasakhlisov ESh, Benight AS, Morozov VF.

J Chem Phys. 2005 Nov 15;123(19):194701.

PMID:
16321104
[PubMed - indexed for MEDLINE]
2.

Two scale generalized model of polypeptide chains.

Badasyan AV, Tonoyan ShA, Tsarukyan AV, Mamasakhlisov YSh, Benight AS, Morozov VF.

J Chem Phys. 2008 May 21;128(19):195101. doi: 10.1063/1.2918732.

PMID:
18500899
[PubMed - indexed for MEDLINE]
3.

Stacking heterogeneity: a model for the sequence dependent melting cooperativity of duplex DNA.

Grigoryan AV, Mamasakhlisov ESh, Buryakina TY, Tsarukyan AV, Benight AS, Morozov VF.

J Chem Phys. 2007 Apr 28;126(16):165101.

PMID:
17477633
[PubMed - indexed for MEDLINE]
4.

Stacking and hydrogen bonding: DNA cooperativity at melting.

Morozov VF, Badasyan AV, Grigoryan AV, Sahakyan MA, Mamasakhlisov YSh.

Biopolymers. 2004 Dec 5;75(5):434-9.

PMID:
15468063
[PubMed - indexed for MEDLINE]
5.

Influence of supercoiling on the disruption of dsDNA.

Chitanvis SM, Welch PM.

J Chem Phys. 2005 Sep 22;123(12):124901.

PMID:
16392521
[PubMed - indexed for MEDLINE]
6.

Helix-coil transition of a four-way DNA junction observed by multiple fluorescence parameters.

Vámosi G, Clegg RM.

J Phys Chem B. 2008 Oct 16;112(41):13136-48. doi: 10.1021/jp8034055. Epub 2008 Sep 24.

PMID:
18811195
[PubMed - indexed for MEDLINE]
7.

Separation of time scale and coupling in the motion governed by the coarse-grained and fine degrees of freedom in a polypeptide backbone.

Murarka RK, Liwo A, Scheraga HA.

J Chem Phys. 2007 Oct 21;127(15):155103.

PMID:
17949219
[PubMed - indexed for MEDLINE]
8.

Entropy and heat capacity of DNA melting from temperature dependence of single molecule stretching.

Williams MC, Wenner JR, Rouzina I, Bloomfield VA.

Biophys J. 2001 Apr;80(4):1932-9.

PMID:
11259306
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Melting of persistent double-stranded polymers.

Rahi SJ, Hertzberg MP, Kardar M.

Phys Rev E Stat Nonlin Soft Matter Phys. 2008 Nov;78(5 Pt 1):051910. Epub 2008 Nov 12.

PMID:
19113158
[PubMed - indexed for MEDLINE]
10.

Probability distribution analysis of force induced unzipping of DNA.

Kumar S, Giri D.

J Chem Phys. 2006 Jul 28;125(4):44905.

PMID:
16942190
[PubMed - indexed for MEDLINE]
11.

Unified description of poly- and oligonucleotide DNA melting: nearest-neighbor, Poland-Sheraga, and lattice models.

Everaers R, Kumar S, Simm C.

Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Apr;75(4 Pt 1):041918. Epub 2007 Apr 27.

PMID:
17500932
[PubMed - indexed for MEDLINE]
12.

Reparametrizing the loop entropy weights: effect on DNA melting curves.

Blossey R, Carlon E.

Phys Rev E Stat Nonlin Soft Matter Phys. 2003 Dec;68(6 Pt 1):061911. Epub 2003 Dec 24.

PMID:
14754238
[PubMed - indexed for MEDLINE]
13.

Volumetric properties of the formation of double stranded DNA: a nearest-neighbor analysis.

Dubins DN, Macgregor RB Jr.

Biopolymers. 2004 Feb 5;73(2):242-57.

PMID:
14755581
[PubMed - indexed for MEDLINE]
14.

Intersegment interactions and helix-coil transition within the generalized model of polypeptide chains approach.

Badasyan AV, Hayrapetyan GN, Tonoyan ShA, Mamasakhlisov YSh, Benight AS, Morozov VF.

J Chem Phys. 2009 Sep 21;131(11):115104. doi: 10.1063/1.3216564.

PMID:
19778153
[PubMed - indexed for MEDLINE]
15.

A study of density of states and ground states in hydrophobic-hydrophilic protein folding models by equi-energy sampling.

Kou SC, Oh J, Wong WH.

J Chem Phys. 2006 Jun 28;124(24):244903.

PMID:
16821999
[PubMed - indexed for MEDLINE]
16.

Theoretical investigation of finite size effects at DNA melting.

Buyukdagli S, Joyeux M.

Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Aug;76(2 Pt 1):021917. Epub 2007 Aug 17.

PMID:
17930075
[PubMed - indexed for MEDLINE]
17.

DNA unzipping phase diagram calculated via replica theory.

Roland CB, Hatch KA, Prentiss M, Shakhnovich EI.

Phys Rev E Stat Nonlin Soft Matter Phys. 2009 May;79(5 Pt 1):051923. Epub 2009 May 28.

PMID:
19518496
[PubMed - indexed for MEDLINE]
18.

Modeling of folding and unfolding mechanisms in alanine-based alpha-helical polypeptides.

Morozov AN, Lin SH.

J Phys Chem B. 2006 Oct 19;110(41):20555-61.

PMID:
17034243
[PubMed - indexed for MEDLINE]
19.

Hydrogen-bonded nanotubes as a model for DNA transcription.

Sajfert V, Dajić R, Tosić B.

J Nanosci Nanotechnol. 2004 Sep;4(7):886-90.

PMID:
15570977
[PubMed - indexed for MEDLINE]
20.

Different pulling modes in DNA overstretching: a theoretical analysis.

Marenduzzo D, Orlandini E, Seno F, Trovato A.

Phys Rev E Stat Nonlin Soft Matter Phys. 2010 May;81(5 Pt 1):051926. Epub 2010 May 27.

PMID:
20866280
[PubMed - indexed for MEDLINE]

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