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1.

Pattern-oriented modeling of agent-based complex systems: lessons from ecology.

Grimm V, Revilla E, Berger U, Jeltsch F, Mooij WM, Railsback SF, Thulke HH, Weiner J, Wiegand T, DeAngelis DL.

Science. 2005 Nov 11;310(5750):987-91. Review.

PMID:
16284171
2.

An object-oriented framework for dynamic ecosystem modeling: application for integrated risk assessment.

Sydelko PJ, Hlohowskyj I, Majerus K, Christiansen J, Dolph J.

Sci Total Environ. 2001 Jul 2;274(1-3):271-81.

PMID:
11453302
3.

Agent-based modeling in ecological economics.

Heckbert S, Baynes T, Reeson A.

Ann N Y Acad Sci. 2010 Jan;1185:39-53. doi: 10.1111/j.1749-6632.2009.05286.x. Review.

PMID:
20146761
4.
5.

Complexity, collective effects, and modeling of ecosystems: formation, function, and stability.

Jensen HJ, Arcaute E.

Ann N Y Acad Sci. 2010 May;1195 Suppl 1:E19-26. doi: 10.1111/j.1749-6632.2009.05416.x.

PMID:
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6.

Ecological risk assessment of genetically modified crops based on cellular automata modeling.

Yang J, Wang ZR, Yang DL, Yang Q, Yan J, He MF.

Biotechnol Adv. 2009 Nov-Dec;27(6):1132-6. doi: 10.1016/j.biotechadv.2009.05.024. Epub 2009 May 27.

PMID:
19477260
7.

Topological invariants in the study of a chaotic food chain system.

Duarte J, Januário C, Martins N.

Chaos. 2008 Jun;18(2):023109. doi: 10.1063/1.2903843.

PMID:
18601476
8.
9.

An individual-based evolving predator-prey ecosystem simulation using a fuzzy cognitive map as the behavior model.

Gras R, Devaurs D, Wozniak A, Aspinall A.

Artif Life. 2009 Fall;15(4):423-63. doi: 10.1162/artl.2009.Gras.012.

PMID:
19463060
10.

Accounting for uncertainty in ecological analysis: the strengths and limitations of hierarchical statistical modeling.

Cressie N, Calder CA, Clark JS, Ver Hoef JM, Wikle CK.

Ecol Appl. 2009 Apr;19(3):553-70. Review.

PMID:
19425416
11.

Equation-based models of dynamic biological systems.

Daun S, Rubin J, Vodovotz Y, Clermont G.

J Crit Care. 2008 Dec;23(4):585-94. doi: 10.1016/j.jcrc.2008.02.003. Epub 2008 May 14. Review.

PMID:
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12.

Understanding and predicting ecological dynamics: are major surprises inevitable?

Doak DF, Estes JA, Halpern BS, Jacob U, Lindberg DR, Lovvorn J, Monson DH, Tinker MT, Williams TM, Wootton JT, Carroll I, Emmerson M, Micheli F, Novak M.

Ecology. 2008 Apr;89(4):952-61.

PMID:
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13.
14.

Post-hoc pattern-oriented testing and tuning of an existing large model: lessons from the field vole.

Topping CJ, Dalkvist T, Grimm V.

PLoS One. 2012;7(9):e45872. doi: 10.1371/journal.pone.0045872. Epub 2012 Sep 25.

15.

Using circuit theory to model connectivity in ecology, evolution, and conservation.

McRae BH, Dickson BG, Keitt TH, Shah VB.

Ecology. 2008 Oct;89(10):2712-24.

PMID:
18959309
16.

Ecosystem management and ecological modeling.

Jørgensen SE.

ScientificWorldJournal. 2002 Jan 14;2:107-21.

17.

Machine learning methods without tears: a primer for ecologists.

Olden JD, Lawler JJ, Poff NL.

Q Rev Biol. 2008 Jun;83(2):171-93. Review.

PMID:
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18.

From individuals to ecosystem function: toward an integration of evolutionary and ecosystem ecology.

Schmitz OJ, Grabowski JH, Peckarsky BL, Preisser EL, Trussell GC, Vonesh JR.

Ecology. 2008 Sep;89(9):2436-45.

PMID:
18831165
19.

A structured and dynamic framework to advance traits-based theory and prediction in ecology.

Webb CT, Hoeting JA, Ames GM, Pyne MI, LeRoy Poff N.

Ecol Lett. 2010 Mar;13(3):267-83. doi: 10.1111/j.1461-0248.2010.01444.x.

PMID:
20455917
20.

A movement ecology paradigm for unifying organismal movement research.

Nathan R, Getz WM, Revilla E, Holyoak M, Kadmon R, Saltz D, Smouse PE.

Proc Natl Acad Sci U S A. 2008 Dec 9;105(49):19052-9. doi: 10.1073/pnas.0800375105. Epub 2008 Dec 5. Review.

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