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Results: 1 to 20 of 130

1.

Comparative plant genomics resources at PlantGDB.

Dong Q, Lawrence CJ, Schlueter SD, Wilkerson MD, Kurtz S, Lushbough C, Brendel V.

Plant Physiol. 2005 Oct;139(2):610-8.

PMID:
16219921
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

PlantGDB, plant genome database and analysis tools.

Dong Q, Schlueter SD, Brendel V.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D354-9.

PMID:
14681433
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

PlantGDB: a resource for comparative plant genomics.

Duvick J, Fu A, Muppirala U, Sabharwal M, Wilkerson MD, Lawrence CJ, Lushbough C, Brendel V.

Nucleic Acids Res. 2008 Jan;36(Database issue):D959-65. Epub 2007 Dec 6.

PMID:
18063570
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

GeneSeqer@PlantGDB: Gene structure prediction in plant genomes.

Schlueter SD, Dong Q, Brendel V.

Nucleic Acids Res. 2003 Jul 1;31(13):3597-600.

PMID:
12824374
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

A conifer genomics resource of 200,000 spruce (Picea spp.) ESTs and 6,464 high-quality, sequence-finished full-length cDNAs for Sitka spruce (Picea sitchensis).

Ralph SG, Chun HJ, Kolosova N, Cooper D, Oddy C, Ritland CE, Kirkpatrick R, Moore R, Barber S, Holt RA, Jones SJ, Marra MA, Douglas CJ, Ritland K, Bohlmann J.

BMC Genomics. 2008 Oct 14;9:484. doi: 10.1186/1471-2164-9-484.

PMID:
18854048
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Gene structure prediction from consensus spliced alignment of multiple ESTs matching the same genomic locus.

Brendel V, Xing L, Zhu W.

Bioinformatics. 2004 May 1;20(7):1157-69. Epub 2004 Feb 5.

PMID:
14764557
[PubMed - indexed for MEDLINE]
Free Article
8.

Refined annotation of the Arabidopsis genome by complete expressed sequence tag mapping.

Zhu W, Schlueter SD, Brendel V.

Plant Physiol. 2003 Jun;132(2):469-84.

PMID:
12805580
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Generation, annotation, analysis and database integration of 16,500 white spruce EST clusters.

Pavy N, Paule C, Parsons L, Crow JA, Morency MJ, Cooke J, Johnson JE, Noumen E, Guillet-Claude C, Butterfield Y, Barber S, Yang G, Liu J, Stott J, Kirkpatrick R, Siddiqui A, Holt R, Marra M, Seguin A, Retzel E, Bousquet J, MacKay J.

BMC Genomics. 2005 Oct 19;6:144.

PMID:
16236172
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Gene identification and expression analysis of 86,136 Expressed Sequence Tags (EST) from the rice genome.

Zhou Y, Tang J, Walker MG, Zhang X, Wang J, Hu S, Xu H, Deng Y, Dong J, Ye L, Lin L, Li J, Wang X, Xu H, Pan Y, Lin W, Tian W, Liu J, Wei L, Liu S, Yang H, Yu J, Wang J.

Genomics Proteomics Bioinformatics. 2003 Feb;1(1):26-42.

PMID:
15626331
[PubMed - indexed for MEDLINE]
11.

TriFLDB: a database of clustered full-length coding sequences from Triticeae with applications to comparative grass genomics.

Mochida K, Yoshida T, Sakurai T, Ogihara Y, Shinozaki K.

Plant Physiol. 2009 Jul;150(3):1135-46. doi: 10.1104/pp.109.138214. Epub 2009 May 15.

PMID:
19448038
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Incorporation of splice site probability models for non-canonical introns improves gene structure prediction in plants.

Sparks ME, Brendel V.

Bioinformatics. 2005 Nov 1;21 Suppl 3:iii20-30.

PMID:
16306388
[PubMed - indexed for MEDLINE]
Free Article
13.

Functional analysis and comparative genomics of expressed sequence tags from the lycophyte Selaginella moellendorffii.

Weng JK, Tanurdzic M, Chapple C.

BMC Genomics. 2005 Jun 6;6:85.

PMID:
15938755
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Genome-wide analysis of the rice and Arabidopsis non-specific lipid transfer protein (nsLtp) gene families and identification of wheat nsLtp genes by EST data mining.

Boutrot F, Chantret N, Gautier MF.

BMC Genomics. 2008 Feb 21;9:86. doi: 10.1186/1471-2164-9-86.

PMID:
18291034
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

BGI-RIS: an integrated information resource and comparative analysis workbench for rice genomics.

Zhao W, Wang J, He X, Huang X, Jiao Y, Dai M, Wei S, Fu J, Chen Y, Ren X, Zhang Y, Ni P, Zhang J, Li S, Wang J, Wong GK, Zhao H, Yu J, Yang H, Wang J.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D377-82.

PMID:
14681438
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Wheat EST sequence assembly facilitates comparison of gene contents among plant species and discovery of novel genes.

Hattori J, Ouellet T, Tinker NA.

Genome. 2005 Apr;48(2):197-206.

PMID:
15838541
[PubMed - indexed for MEDLINE]
17.

Generation and analysis of a 29,745 unique Expressed Sequence Tags from the Pacific oyster (Crassostrea gigas) assembled into a publicly accessible database: the GigasDatabase.

Fleury E, Huvet A, Lelong C, de Lorgeril J, Boulo V, Gueguen Y, Bachère E, Tanguy A, Moraga D, Fabioux C, Lindeque P, Shaw J, Reinhardt R, Prunet P, Davey G, Lapègue S, Sauvage C, Corporeau C, Moal J, Gavory F, Wincker P, Moreews F, Klopp C, Mathieu M, Boudry P, Favrel P.

BMC Genomics. 2009 Jul 29;10:341. doi: 10.1186/1471-2164-10-341.

PMID:
19640306
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

ESTree db: a tool for peach functional genomics.

Lazzari B, Caprera A, Vecchietti A, Stella A, Milanesi L, Pozzi C.

BMC Bioinformatics. 2005 Dec 1;6 Suppl 4:S16.

PMID:
16351742
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

The first set of EST resource for gene discovery and marker development in pigeonpea (Cajanus cajan L.).

Raju NL, Gnanesh BN, Lekha P, Jayashree B, Pande S, Hiremath PJ, Byregowda M, Singh NK, Varshney RK.

BMC Plant Biol. 2010 Mar 11;10:45. doi: 10.1186/1471-2229-10-45.

PMID:
20222972
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Characterization of 954 bovine full-CDS cDNA sequences.

Harhay GP, Sonstegard TS, Keele JW, Heaton MP, Clawson ML, Snelling WM, Wiedmann RT, Van Tassell CP, Smith TP.

BMC Genomics. 2005 Nov 23;6:166.

PMID:
16305752
[PubMed - indexed for MEDLINE]
Free PMC Article

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