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Similar articles for PubMed (Select 16169926)

1.

Galaxy: a platform for interactive large-scale genome analysis.

Giardine B, Riemer C, Hardison RC, Burhans R, Elnitski L, Shah P, Zhang Y, Blankenberg D, Albert I, Taylor J, Miller W, Kent WJ, Nekrutenko A.

Genome Res. 2005 Oct;15(10):1451-5. Epub 2005 Sep 16.

2.

A framework for collaborative analysis of ENCODE data: making large-scale analyses biologist-friendly.

Blankenberg D, Taylor J, Schenck I, He J, Zhang Y, Ghent M, Veeraraghavan N, Albert I, Miller W, Makova KD, Hardison RC, Nekrutenko A.

Genome Res. 2007 Jun;17(6):960-4.

3.

JUICE: a data management system that facilitates the analysis of large volumes of information in an EST project workflow.

Latorre M, Silva H, Saba J, Guziolowski C, Vizoso P, Martinez V, Maldonado J, Morales A, Caroca R, Cambiazo V, Campos-Vargas R, Gonzalez M, Orellana A, Retamales J, Meisel LA.

BMC Bioinformatics. 2006 Nov 23;7:513.

4.

The ENCODEdb portal: simplified access to ENCODE Consortium data.

Elnitski LL, Shah P, Moreland RT, Umayam L, Wolfsberg TG, Baxevanis AD.

Genome Res. 2007 Jun;17(6):954-9.

5.

Asking complex questions of the genome without programming.

Woollard PM.

Methods Mol Biol. 2010;628:39-52. doi: 10.1007/978-1-60327-367-1_3.

PMID:
20238075
6.

EnGenIUS -- Environmental Genome Informational Utility System.

Kaplarevic M, Murray AE, Cary SC, Gao GR.

J Bioinform Comput Biol. 2008 Dec;6(6):1193-211.

PMID:
19090024
7.
8.

ESTPiper--a web-based analysis pipeline for expressed sequence tags.

Tang Z, Choi JH, Hemmerich C, Sarangi A, Colbourne JK, Dong Q.

BMC Genomics. 2009 Apr 21;10:174. doi: 10.1186/1471-2164-10-174.

9.

The GATO gene annotation tool for research laboratories.

Fujita A, Massirer KB, Durham AM, Ferreira CE, Sogayar MC.

Braz J Med Biol Res. 2005 Nov;38(11):1571-4. Epub 2005 Oct 26.

10.

Integration of bioinformatics resources for functional analysis of gene expression and proteomic data.

Huang H, Hu ZZ, Arighi CN, Wu CH.

Front Biosci. 2007 Sep 1;12:5071-88. Review.

PMID:
17569631
11.

MADAP, a flexible clustering tool for the interpretation of one-dimensional genome annotation data.

Schmid CD, Sengstag T, Bucher P, Delorenzi M.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W201-5. Epub 2007 May 25.

12.

The UCSC Genome Browser Database: update 2006.

Hinrichs AS, Karolchik D, Baertsch R, Barber GP, Bejerano G, Clawson H, Diekhans M, Furey TS, Harte RA, Hsu F, Hillman-Jackson J, Kuhn RM, Pedersen JS, Pohl A, Raney BJ, Rosenbloom KR, Siepel A, Smith KE, Sugnet CW, Sultan-Qurraie A, Thomas DJ, Trumbower H, Weber RJ, Weirauch M, Zweig AS, Haussler D, Kent WJ.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D590-8.

13.

CGAS: a comparative genome annotation system.

Choi K, Yang Y, Kim S.

Methods Mol Biol. 2007;395:133-46.

PMID:
17993671
15.

Comparative genomic analysis using the UCSC genome browser.

Karolchik D, Bejerano G, Hinrichs AS, Kuhn RM, Miller W, Rosenbloom KR, Zweig AS, Haussler D, Kent WJ.

Methods Mol Biol. 2007;395:17-34.

PMID:
17993665
16.
17.

RiceGeneThresher: a web-based application for mining genes underlying QTL in rice genome.

Thongjuea S, Ruanjaichon V, Bruskiewich R, Vanavichit A.

Nucleic Acids Res. 2009 Jan;37(Database issue):D996-1000. doi: 10.1093/nar/gkn638. Epub 2008 Sep 27.

18.

Galaxy tools and workflows for sequence analysis with applications in molecular plant pathology.

Cock PJ, Gr√ľning BA, Paszkiewicz K, Pritchard L.

PeerJ. 2013 Sep 17;1:e167. doi: 10.7717/peerj.167. eCollection 2013.

19.

Genomic pathways database and biological data management.

Ozsoyoglu ZM, Ozsoyoglu G, Nadeau J.

Anim Genet. 2006 Aug;37 Suppl 1:41-7.

PMID:
16887001
20.

DoOPSearch: a web-based tool for finding and analysing common conserved motifs in the promoter regions of different chordate and plant genes.

Sebestyén E, Nagy T, Suhai S, Barta E.

BMC Bioinformatics. 2009 Jun 16;10 Suppl 6:S6. doi: 10.1186/1471-2105-10-S6-S6.

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