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1.

The development of common data elements for a multi-institute prostate cancer tissue bank: the Cooperative Prostate Cancer Tissue Resource (CPCTR) experience.

Patel AA, Kajdacsy-Balla A, Berman JJ, Bosland M, Datta MW, Dhir R, Gilbertson J, Melamed J, Orenstein J, Tai KF, Becich MJ.

BMC Cancer. 2005 Aug 21;5:108.

2.

An informatics model for tissue banks--lessons learned from the Cooperative Prostate Cancer Tissue Resource.

Patel AA, Gilbertson JR, Parwani AV, Dhir R, Datta MW, Gupta R, Berman JJ, Melamed J, Kajdacsy-Balla A, Orenstein J, Becich MJ; Cooperative Prostate Cancer Tissue Resource.

BMC Cancer. 2006 May 5;6:120.

3.

The cooperative prostate cancer tissue resource: a specimen and data resource for cancer researchers.

Melamed J, Datta MW, Becich MJ, Orenstein JM, Dhir R, Silver S, Fidélia-Lambert M, Kadjacsy-Balla A, Macias V, Patel A, Walden PD, Bosland MC, Berman JJ.

Clin Cancer Res. 2004 Jul 15;10(14):4614-21.

4.

The development and deployment of Common Data Elements for tissue banks for translational research in cancer - an emerging standard based approach for the Mesothelioma Virtual Tissue Bank.

Mohanty SK, Mistry AT, Amin W, Parwani AV, Pople AK, Schmandt L, Winters SB, Milliken E, Kim P, Whelan NB, Farhat G, Melamed J, Taioli E, Dhir R, Pass HI, Becich MJ.

BMC Cancer. 2008 Apr 8;8:91. doi: 10.1186/1471-2407-8-91.

5.

The tissue microarray data exchange specification: implementation by the Cooperative Prostate Cancer Tissue Resource.

Berman JJ, Datta M, Kajdacsy-Balla A, Melamed J, Orenstein J, Dobbin K, Patel A, Dhir R, Becich MJ.

BMC Bioinformatics. 2004 Feb 27;5:19.

6.

National Mesothelioma Virtual Bank: a standard based biospecimen and clinical data resource to enhance translational research.

Amin W, Parwani AV, Schmandt L, Mohanty SK, Farhat G, Pople AK, Winters SB, Whelan NB, Schneider AM, Milnes JT, Valdivieso FA, Feldman M, Pass HI, Dhir R, Melamed J, Becich MJ.

BMC Cancer. 2008 Aug 13;8:236. doi: 10.1186/1471-2407-8-236.

7.

A decade of experience in the development and implementation of tissue banking informatics tools for intra and inter-institutional translational research.

Amin W, Singh H, Pople AK, Winters S, Dhir R, Parwani AV, Becich MJ.

J Pathol Inform. 2010 Aug 10;1. pii: 12. doi: 10.4103/2153-3539.68314.

8.

Practical aspects of planning, building, and interpreting tissue microarrays: the Cooperative Prostate Cancer Tissue Resource experience.

Kajdacsy-Balla A, Geynisman JM, Macias V, Setty S, Nanaji NM, Berman JJ, Dobbin K, Melamed J, Kong X, Bosland M, Orenstein J, Bayerl J, Becich MJ, Dhir R, Datta MW; Cooperative Prostate Cancer Tissue Resource.

J Mol Histol. 2007 May;38(2):113-21. Epub 2007 Feb 21. Review.

PMID:
17318343
9.

The tissue microarray data exchange specification: a community-based, open source tool for sharing tissue microarray data.

Berman JJ, Edgerton ME, Friedman BA.

BMC Med Inform Decis Mak. 2003 May 23;3:5. Epub 2003 May 23.

10.

National Institute of Neurological Disorders and Stroke Common Data Element Project - approach and methods.

Grinnon ST, Miller K, Marler JR, Lu Y, Stout A, Odenkirchen J, Kunitz S.

Clin Trials. 2012 Jun;9(3):322-9. doi: 10.1177/1740774512438980. Epub 2012 Feb 27.

11.

The tissue micro-array data exchange specification: a web based experience browsing imported data.

Nohle DG, Hackman BA, Ayers LW.

BMC Med Inform Decis Mak. 2005 Aug 8;5:25.

12.

Design and utilization of the colorectal and pancreatic neoplasm virtual biorepository: An early detection research network initiative.

Amin W, Singh H, Dzubinski LA, Schoen RE, Parwani AV.

J Pathol Inform. 2010 Oct 1;1:22. doi: 10.4103/2153-3539.70831.

13.

A novel cross-disciplinary multi-institute approach to translational cancer research: lessons learned from Pennsylvania Cancer Alliance Bioinformatics Consortium (PCABC).

Patel AA, Gilbertson JR, Showe LC, London JW, Ross E, Ochs MF, Carver J, Lazarus A, Parwani AV, Dhir R, Beck JR, Liebman M, Garcia FU, Prichard J, Wilkerson M, Herberman RB, Becich MJ; PCABC.

Cancer Inform. 2007 Jun 8;3:255-74.

14.

Development of common data elements: the experience of and recommendations from the early detection research network.

Winget MD, Baron JA, Spitz MR, Brenner DE, Warzel D, Kincaid H, Thornquist M, Feng Z.

Int J Med Inform. 2003 Apr;70(1):41-8.

PMID:
12706181
15.

Metadata mapping and reuse in caBIG.

Kunz I, Lin MC, Frey L.

BMC Bioinformatics. 2009 Feb 5;10 Suppl 2:S4. doi: 10.1186/1471-2105-10-S2-S4.

16.

The NCI All Ireland Cancer Conference.

Johnston PG, Daly PA, Liu E.

Oncologist. 1999;4(4):275-277.

17.

An informatics supported web-based data annotation and query tool to expedite translational research for head and neck malignancies.

Amin W, Kang HP, Egloff AM, Singh H, Trent K, Ridge-Hetrick J, Seethala RR, Grandis J, Parwani AV.

BMC Cancer. 2009 Nov 13;9:396. doi: 10.1186/1471-2407-9-396.

18.

A model for the design and construction of a resource for the validation of prognostic prostate cancer biomarkers: the Canary Prostate Cancer Tissue Microarray.

Hawley S, Fazli L, McKenney JK, Simko J, Troyer D, Nicolas M, Newcomb LF, Cowan JE, Crouch L, Ferrari M, Hernandez J, Hurtado-Coll A, Kuchinsky K, Liew J, Mendez-Meza R, Smith E, Tenggara I, Zhang X, Carroll PR, Chan JM, Gleave M, Lance R, Lin DW, Nelson PS, Thompson IM, Feng Z, True LD, Brooks JD.

Adv Anat Pathol. 2013 Jan;20(1):39-44. doi: 10.1097/PAP.0b013e31827b665b. Review.

19.

Banking of fresh-frozen prostate tissue using the alternate mirror image protocol: methods, validation, and impact on the pathological prognostic parameters in radical prostatectomy.

Brimo F, Sircar K, Chevalier S, Saad F, Lacombe L, Têtu B, Scarlata E, Aprikian A.

Cell Tissue Bank. 2012 Dec;13(4):631-8. doi: 10.1007/s10561-011-9284-y. Epub 2011 Dec 27.

PMID:
22200970
20.

Common data elements in epilepsy research: development and implementation of the NINDS epilepsy CDE project.

Loring DW, Lowenstein DH, Barbaro NM, Fureman BE, Odenkirchen J, Jacobs MP, Austin JK, Dlugos DJ, French JA, Gaillard WD, Hermann BP, Hesdorffer DC, Roper SN, Van Cott AC, Grinnon S, Stout A.

Epilepsia. 2011 Jun;52(6):1186-91. doi: 10.1111/j.1528-1167.2011.03018.x. Epub 2011 Mar 22.

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