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16034625,19453446,30115100,23057663,22559868,18780739,15749759,19011002,14663527,16158239,11439119,30356268,23104862,20584339,18032588,23807536,23171245,28854566,24614886,18167561,17010109,20725147,20512353,15805493,14986017,21635794,15500466,32435866,19483776,11962634,25572231,31675912,17028971,21971991,23855320,22286503,15499398,15659632,27778102,21423280,11244111,17004014,25476263,28776783,23369001,12021852,34405283,17570855,29506469,19483775,15952073,27821059,36376315,29078757,24548250,33419466,12087189,26687725,26315263,16954538,28365739,16177898,32361835,15720707,17556529,22691070,9615455,32988994,18303044,15284880,20581307,24065734,12746511,7498776,9694667,31064091,25432969,27562405,23595021,26231981,9796102,18612649,25962417,8851798,22815845,10899140,11962636,22086332,30824026,24810432,24086561,27898761,29783941,30802553,1712753,22327652,9544532,16179990,21467573,16534632,23426643,23260030,14734305,28068923,33724368,28204924,27481288,34983397,11319272,36787337,19448038,19558723,11999850,23124323,31843001,31381222,20002321,31553475,27729435,32684157,34424154,34648488,18301877,29046683,27832372,30285604,2545522,7651833,34503979,10205898,21304975,23956090,27154274,17295124,27235540,33883323,31821995,14760520,34800971,23645600,29281015,29684010,18093338,17551673,7557360,31049399,36937792,35959634,33131144,25797922,12172030,21917144,12853133,32955944,12416630,34856758,29538441,19125217,28774284,29934806,34555288,26950253,29463772,17435244,31529539,29804262,12830985,20163715,32287287,21273706,20880995,33081418,31730193,18231813,19586839,7888753,11092750,16009996,31659260,12454082,22726298,33484020,22703335,28158585,4020867,14770300,31877707,31299888,24204022,36619351,30867521,21850457,34794377,31633795,35035898,35529951,22334646,12152328,15330117,32601732,23807511,27189548,16093685,8343599,26887375,537913,23251367,18753790,29705597,35904928,18036258,26802115,12547512,34100895,29476915,20226076,27174439,24002643,24088337,9461468,18446373,32300014,31849336,22933118,22200636,34634072,33288000,7704416,26429387,34202586,29525543,23185607,19183808,26403244,29508296,19280695,18294369,11672845,24794071,21943048,26061193,29283188,19780987,34169647,30356408,34044766,34528512,19213797,27733546,34715903,18931456,33900606,28465726,35627271,20823338,33014014,18273826,28182971,27671023,27258693,28577791,32075564,35605195,30101318,31479576,9549067,30889931,30337918,27440791,8574448,33706417,31857829,22272293,25644271,23552491,20808526,23984937,33543711,29410521,36307986,33799706,36714723,30325439,27552804,34295368,30093548,29438956,27566762,2071151,34217229,32979565,21760771,35217860,22491057,11719240,31290922,29720997,14621267,26943938,28681105,33900611,31307500,21929767,35887150,30719103,9707597,33900594,32742313,23337972,24011260,22474410,36013369,29946369,21535899,32663247,29715568,33638119,24894500,34387946,29270235,32452001,18252213,20798934,34191026,30739120,21940637,36005323,33973633,35348724,24571694,36119578,33407840,28855262,12188046,33217199,28814978,24616835,33964159,32075565,36449155,25317107,34904403,23275488,36484157,32973835,36156149,36678994,33072155,24926322,35453688,35124171,24832231,35088819,1650615,24860841,30672977,31740772,28949090,24616836,29941591,33622117,24177832,33900604,22250128,16857058,30423889,36971261,36758027,34861049,34138525,30232369,23161406,26874965,20497996,24704977,32336995,28164239,32977057,25834645,35719395,995651,24198348,31636940,29882892,34977976,24833511,34705830,31056858,32630504,33598867,21627776,23020800,34082708,32903772,35751614,24201338,20424639,35058771,35771769,22645565,32917036,22016865,33671964,17984973,24162414,27508170,11154320,33875482,13949662,33682878,24786468,32447540,34020551,26904375,35037215,24241005,34879605,19545381,26244060,34923926,35234971,29225705,32587636,24264956,11487685,31193573,23276284,8751362,36691901,24678954,26045719,28224083,33436076,35617174,32733517,28127581,16656603,36388504,35371118,12187913,24197294,16653522[uid]

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Updating of transposable element annotations from large wheat genomic sequences reveals diverse activities and gene associations.

Sabot F, Guyot R, Wicker T, Chantret N, Laubin B, Chalhoub B, Leroy P, Sourdille P, Bernard M. Sabot F, et al. Mol Genet Genomics. 2005 Sep;274(2):119-30. doi: 10.1007/s00438-005-0012-9. Epub 2005 Oct 11. Mol Genet Genomics. 2005. PMID: 16034625

A whole-genome snapshot of 454 sequences exposes the composition of the barley genome and provides evidence for parallel evolution of genome size in wheat and barley.

Wicker T, Taudien S, Houben A, Keller B, Graner A, Platzer M, Stein N. Wicker T, et al. Plant J. 2009 Sep;59(5):712-22. doi: 10.1111/j.1365-313X.2009.03911.x. Epub 2009 May 12. Plant J. 2009. PMID: 19453446 Free article.

Impact of transposable elements on genome structure and evolution in bread wheat.

Wicker T, Gundlach H, Spannagl M, Uauy C, Borrill P, Ramírez-González RH, De Oliveira R; International Wheat Genome Sequencing Consortium; Mayer KFX, Paux E, Choulet F. Wicker T, et al. Genome Biol. 2018 Aug 17;19(1):103. doi: 10.1186/s13059-018-1479-0. Genome Biol. 2018. PMID: 30115100 Free PMC article.

Comparative analysis of genome composition in Triticeae reveals strong variation in transposable element dynamics and nucleotide diversity.

Middleton CP, Stein N, Keller B, Kilian B, Wicker T. Middleton CP, et al. Plant J. 2013 Jan;73(2):347-56. doi: 10.1111/tpj.12048. Epub 2012 Nov 26. Plant J. 2013. PMID: 23057663 Free article.

Chromosome arm-specific BAC end sequences permit comparative analysis of homoeologous chromosomes and genomes of polyploid wheat.

Sehgal SK, Li W, Rabinowicz PD, Chan A, Simková H, Doležel J, Gill BS. Sehgal SK, et al. BMC Plant Biol. 2012 May 4;12:64. doi: 10.1186/1471-2229-12-64. BMC Plant Biol. 2012. PMID: 22559868 Free PMC article.

Dynamics and differential proliferation of transposable elements during the evolution of the B and A genomes of wheat.

Charles M, Belcram H, Just J, Huneau C, Viollet A, Couloux A, Segurens B, Carter M, Huteau V, Coriton O, Appels R, Samain S, Chalhoub B. Charles M, et al. Genetics. 2008 Oct;180(2):1071-86. doi: 10.1534/genetics.108.092304. Epub 2008 Sep 9. Genetics. 2008. PMID: 18780739 Free PMC article.

Molecular basis of evolutionary events that shaped the hardness locus in diploid and polyploid wheat species (Triticum and Aegilops).

Chantret N, Salse J, Sabot F, Rahman S, Bellec A, Laubin B, Dubois I, Dossat C, Sourdille P, Joudrier P, Gautier MF, Cattolico L, Beckert M, Aubourg S, Weissenbach J, Caboche M, Bernard M, Leroy P, Chalhoub B. Chantret N, et al. Plant Cell. 2005 Apr;17(4):1033-45. doi: 10.1105/tpc.104.029181. Epub 2005 Mar 4. Plant Cell. 2005. PMID: 15749759 Free PMC article.

Analysis of intraspecies diversity in wheat and barley genomes identifies breakpoints of ancient haplotypes and provides insight into the structure of diploid and hexaploid triticeae gene pools.

Wicker T, Krattinger SG, Lagudah ES, Komatsuda T, Pourkheirandish M, Matsumoto T, Cloutier S, Reiser L, Kanamori H, Sato K, Perovic D, Stein N, Keller B. Wicker T, et al. Plant Physiol. 2009 Jan;149(1):258-70. doi: 10.1104/pp.108.129734. Epub 2008 Nov 14. Plant Physiol. 2009. PMID: 19011002 Free PMC article.

Structural organization of the barley D-hordein locus in comparison with its orthologous regions of wheat genomes.

Gu YQ, Anderson OD, Londeorë CF, Kong X, Chibbar RN, Lazo GR. Gu YQ, et al. Genome. 2003 Dec;46(6):1084-97. doi: 10.1139/g03-071. Genome. 2003. PMID: 14663527

Comparative sequence analysis of the phytochrome C gene and its upstream region in allohexaploid wheat reveals new data on the evolution of its three constituent genomes.

Devos KM, Beales J, Ogihara Y, Doust AN. Devos KM, et al. Plant Mol Biol. 2005 Jul;58(5):625-41. doi: 10.1007/s11103-005-6801-z. Plant Mol Biol. 2005. PMID: 16158239

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