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Results: 1 to 20 of 85

1.

Alignment of metabolic pathways.

Pinter RY, Rokhlenko O, Yeger-Lotem E, Ziv-Ukelson M.

Bioinformatics. 2005 Aug 15;21(16):3401-8. Epub 2005 Jun 28.

PMID:
15985496
[PubMed - indexed for MEDLINE]
Free Article
2.

Deriving phylogenetic trees from the similarity analysis of metabolic pathways.

Heymans M, Singh AK.

Bioinformatics. 2003;19 Suppl 1:i138-46.

PMID:
12855450
[PubMed - indexed for MEDLINE]
Free Article
3.

Simple and fast alignment of metabolic pathways by exploiting local diversity.

Wernicke S, Rasche F.

Bioinformatics. 2007 Aug 1;23(15):1978-85. Epub 2007 May 31.

PMID:
17540683
[PubMed - indexed for MEDLINE]
Free Article
4.

BioMiner--modeling, analyzing, and visualizing biochemical pathways and networks.

Sirava M, Schäfer T, Eiglsperger M, Kaufmann M, Kohlbacher O, Bornberg-Bauer E, Lenhof HP.

Bioinformatics. 2002;18 Suppl 2:S219-30.

PMID:
12386006
[PubMed - indexed for MEDLINE]
Free Article
5.

Reconstruction of metabolic networks from genome data and analysis of their global structure for various organisms.

Ma H, Zeng AP.

Bioinformatics. 2003 Jan 22;19(2):270-7.

PMID:
12538249
[PubMed - indexed for MEDLINE]
Free Article
6.

Observing local and global properties of metabolic pathways: 'load points' and 'choke points' in the metabolic networks.

Rahman SA, Schomburg D.

Bioinformatics. 2006 Jul 15;22(14):1767-74. Epub 2006 May 8.

PMID:
16682421
[PubMed - indexed for MEDLINE]
Free Article
7.

Metabolic pathway alignment between species using a comprehensive and flexible similarity measure.

Li Y, de Ridder D, de Groot MJ, Reinders MJ.

BMC Syst Biol. 2008 Dec 24;2:111. doi: 10.1186/1752-0509-2-111.

PMID:
19108747
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Pathway discovery in metabolic networks by subgraph extraction.

Faust K, Dupont P, Callut J, van Helden J.

Bioinformatics. 2010 May 1;26(9):1211-8. doi: 10.1093/bioinformatics/btq105. Epub 2010 Mar 12.

PMID:
20228128
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

SAGA: a subgraph matching tool for biological graphs.

Tian Y, McEachin RC, Santos C, States DJ, Patel JM.

Bioinformatics. 2007 Jan 15;23(2):232-9. Epub 2006 Nov 16.

PMID:
17110368
[PubMed - indexed for MEDLINE]
Free Article
10.

Analysis of metabolic networks using a pathway distance metric through linear programming.

Simeonidis E, Rison SC, Thornton JM, Bogle ID, Papageorgiou LG.

Metab Eng. 2003 Jul;5(3):211-9.

PMID:
12948755
[PubMed - indexed for MEDLINE]
11.

Network-based regulatory pathways analysis.

Xiong M, Zhao J, Xiong H.

Bioinformatics. 2004 Sep 1;20(13):2056-66. Epub 2004 Apr 8.

PMID:
15072999
[PubMed - indexed for MEDLINE]
Free Article
12.

Consistent alignment of metabolic pathways without abstraction.

Ay F, Kahveci T, de Crécy-Lagard V.

Comput Syst Bioinformatics Conf. 2008;7:237-48.

PMID:
19642284
[PubMed - indexed for MEDLINE]
Free Article
13.

An algorithm for linear metabolic pathway alignment.

Chen M, Hofestaedt R.

In Silico Biol. 2005;5(2):111-28.

PMID:
15972016
[PubMed - indexed for MEDLINE]
14.

PathAligner: metabolic pathway retrieval and alignment.

Chen M, Hofestädt R.

Appl Bioinformatics. 2004;3(4):241-52.

PMID:
15702955
[PubMed - indexed for MEDLINE]
15.

Hierarchical analysis of dependency in metabolic networks.

Gagneur J, Jackson DB, Casari G.

Bioinformatics. 2003 May 22;19(8):1027-34.

PMID:
12761067
[PubMed - indexed for MEDLINE]
Free Article
16.

Complementary identification of multiple flux distributions and multiple metabolic pathways.

Lee DY, Fan LT, Park S, Lee SY, Shafie S, Bertók B, Friedler F.

Metab Eng. 2005 May;7(3):182-200.

PMID:
15885617
[PubMed - indexed for MEDLINE]
17.

Metabolic pathway analysis web service (Pathway Hunter Tool at CUBIC).

Rahman SA, Advani P, Schunk R, Schrader R, Schomburg D.

Bioinformatics. 2005 Apr 1;21(7):1189-93. Epub 2004 Nov 30.

PMID:
15572476
[PubMed - indexed for MEDLINE]
Free Article
18.

FluxAnalyzer: exploring structure, pathways, and flux distributions in metabolic networks on interactive flux maps.

Klamt S, Stelling J, Ginkel M, Gilles ED.

Bioinformatics. 2003 Jan 22;19(2):261-9.

PMID:
12538248
[PubMed - indexed for MEDLINE]
Free Article
19.

Phylogenetic reconstruction from non-genomic data.

Clemente JC, Satou K, Valiente G.

Bioinformatics. 2007 Jan 15;23(2):e110-5.

PMID:
17237077
[PubMed - indexed for MEDLINE]
Free Article
20.

Motif search in graphs: application to metabolic networks.

Lacroix V, Fernandes CG, Sagot MF.

IEEE/ACM Trans Comput Biol Bioinform. 2006 Oct-Dec;3(4):360-8.

PMID:
17085845
[PubMed - indexed for MEDLINE]

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