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Items: 1 to 20 of 186

1.

Motifs, themes and thematic maps of an integrated Saccharomyces cerevisiae interaction network.

Zhang LV, King OD, Wong SL, Goldberg DS, Tong AH, Lesage G, Andrews B, Bussey H, Boone C, Roth FP.

J Biol. 2005;4(2):6. Epub 2005 Jun 1.

2.

Untangling the web of functional and physical interactions in yeast.

Herrgård MJ, Palsson BØ.

J Biol. 2005;4(2):5. Epub 2005 Jun 8. Review.

3.

Network genomics.

Ideker TE.

Ernst Schering Res Found Workshop. 2007;(61):89-115. Review.

PMID:
17249498
4.
5.

Genetic interaction network of the Saccharomyces cerevisiae type 1 phosphatase Glc7.

Logan MR, Nguyen T, Szapiel N, Knockleby J, Por H, Zadworny M, Neszt M, Harrison P, Bussey H, Mandato CA, Vogel J, Lesage G.

BMC Genomics. 2008 Jul 15;9:336. doi: 10.1186/1471-2164-9-336.

6.

Principles of transcriptional control in the metabolic network of Saccharomyces cerevisiae.

Ihmels J, Levy R, Barkai N.

Nat Biotechnol. 2004 Jan;22(1):86-92. Epub 2003 Nov 30.

PMID:
14647306
7.

Computational architecture of the yeast regulatory network.

Maslov S, Sneppen K.

Phys Biol. 2005 Nov 9;2(4):S94-100.

PMID:
16280626
8.

Network motif identification in stochastic networks.

Jiang R, Tu Z, Chen T, Sun F.

Proc Natl Acad Sci U S A. 2006 Jun 20;103(25):9404-9. Epub 2006 Jun 12.

9.

Biological network mapping and source signal deduction.

Brynildsen MP, Wu TY, Jang SS, Liao JC.

Bioinformatics. 2007 Jul 15;23(14):1783-91. Epub 2007 May 11.

10.

Mining bridge and brick motifs from complex biological networks for functionally and statistically significant discovery.

Cheng CY, Huang CY, Sun CT.

IEEE Trans Syst Man Cybern B Cybern. 2008 Feb;38(1):17-24. doi: 10.1109/TSMCB.2007.908842.

PMID:
18270079
11.

Gene regulatory network growth by duplication.

Teichmann SA, Babu MM.

Nat Genet. 2004 May;36(5):492-6. Epub 2004 Apr 11.

PMID:
15107850
12.

Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data.

Zhang Y, Xuan J, de los Reyes BG, Clarke R, Ressom HW.

BMC Bioinformatics. 2008 Apr 21;9:203. doi: 10.1186/1471-2105-9-203.

13.

Study of coordinative gene expression at the biological process level.

Yu T, Sun W, Yuan S, Li KC.

Bioinformatics. 2005 Sep 15;21(18):3651-7. Epub 2005 Aug 2.

14.

Visualization and analysis of the complexome network of Saccharomyces cerevisiae.

Li SS, Xu K, Wilkins MR.

J Proteome Res. 2011 Oct 7;10(10):4744-56. doi: 10.1021/pr200548c. Epub 2011 Sep 7.

PMID:
21842913
15.

Mapping genetically compensatory pathways from synthetic lethal interactions in yeast.

Ma X, Tarone AM, Li W.

PLoS One. 2008 Apr 9;3(4):e1922. doi: 10.1371/journal.pone.0001922.

16.

Stratus not altocumulus: a new view of the yeast protein interaction network.

Batada NN, Reguly T, Breitkreutz A, Boucher L, Breitkreutz BJ, Hurst LD, Tyers M.

PLoS Biol. 2006 Oct;4(10):e317.

17.

A copula method for modeling directional dependence of genes.

Kim JM, Jung YS, Sungur EA, Han KH, Park C, Sohn I.

BMC Bioinformatics. 2008 May 1;9:225. doi: 10.1186/1471-2105-9-225.

18.

The synthetic genetic interaction spectrum of essential genes.

Davierwala AP, Haynes J, Li Z, Brost RL, Robinson MD, Yu L, Mnaimneh S, Ding H, Zhu H, Chen Y, Cheng X, Brown GW, Boone C, Andrews BJ, Hughes TR.

Nat Genet. 2005 Oct;37(10):1147-52. Epub 2005 Sep 11.

19.

Development and implementation of an algorithm for detection of protein complexes in large interaction networks.

Altaf-Ul-Amin M, Shinbo Y, Mihara K, Kurokawa K, Kanaya S.

BMC Bioinformatics. 2006 Apr 14;7:207.

20.

Exploring genetic interactions and networks with yeast.

Boone C, Bussey H, Andrews BJ.

Nat Rev Genet. 2007 Jun;8(6):437-49. Review.

PMID:
17510664
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