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Items: 1 to 20 of 269

1.

ACT: the Artemis Comparison Tool.

Carver TJ, Rutherford KM, Berriman M, Rajandream MA, Barrell BG, Parkhill J.

Bioinformatics. 2005 Aug 15;21(16):3422-3. Epub 2005 Jun 23.

2.

GenoMiner: a tool for genome-wide search of coding and non-coding conserved sequence tags.

Castrignanò T, De Meo PD, Grillo G, Liuni S, Mignone F, Talamo IG, Pesole G.

Bioinformatics. 2006 Feb 15;22(4):497-9. Epub 2005 Nov 2.

3.

GraphDNA: a Java program for graphical display of DNA composition analyses.

Thomas JM, Horspool D, Brown G, Tcherepanov V, Upton C.

BMC Bioinformatics. 2007 Jan 23;8:21.

4.

DNAVis: interactive visualization of comparative genome annotations.

Fiers MW, van de Wetering H, Peeters TH, van Wijk JJ, Nap JP.

Bioinformatics. 2006 Feb 1;22(3):354-5. Epub 2005 Dec 6.

5.

GenomeMatcher: a graphical user interface for DNA sequence comparison.

Ohtsubo Y, Ikeda-Ohtsubo W, Nagata Y, Tsuda M.

BMC Bioinformatics. 2008 Sep 16;9:376. doi: 10.1186/1471-2105-9-376.

6.

Assembling genomic DNA sequences with PHRAP.

de la Bastide M, McCombie WR.

Curr Protoc Bioinformatics. 2007 Mar;Chapter 11:Unit11.4. doi: 10.1002/0471250953.bi1104s17.

PMID:
18428783
7.

The UCSC Genome Browser.

Karolchik D, Hinrichs AS, Kent WJ.

Curr Protoc Bioinformatics. 2007 Mar;Chapter 1:Unit 1.4. doi: 10.1002/0471250953.bi0104s17.

PMID:
18428780
8.

SynBrowse: a synteny browser for comparative sequence analysis.

Pan X, Stein L, Brendel V.

Bioinformatics. 2005 Sep 1;21(17):3461-8. Epub 2005 Jun 30.

9.

Using the Generic Genome Browser (GBrowse).

Donlin MJ.

Curr Protoc Bioinformatics. 2007 Mar;Chapter 9:Unit 9.9. doi: 10.1002/0471250953.bi0909s17.

PMID:
18428797
10.

MultiPipMaker: comparative alignment server for multiple DNA sequences.

Elnitski L, Riemer C, Burhans R, Hardison R, Miller W.

Curr Protoc Bioinformatics. 2005 Apr;Chapter 10:Unit10.4. doi: 10.1002/0471250953.bi1004s9.

PMID:
18428743
11.

Alvira: comparative genomics of viral strains.

Enault F, Fremez R, Baranowski E, Faraut T.

Bioinformatics. 2007 Aug 15;23(16):2178-9. Epub 2007 Jun 5.

12.

Introduction to comparing large sequence sets.

Page RD.

Curr Protoc Bioinformatics. 2003 Feb;Chapter 10:Unit 10.1. doi: 10.1002/0471250953.bi1001s00.

PMID:
18428691
13.

SNP-PHAGE--High throughput SNP discovery pipeline.

Matukumalli LK, Grefenstette JJ, Hyten DL, Choi IY, Cregan PB, Van Tassell CP.

BMC Bioinformatics. 2006 Oct 23;7:468.

14.

Phylo-VISTA: interactive visualization of multiple DNA sequence alignments.

Shah N, Couronne O, Pennacchio LA, Brudno M, Batzoglou S, Bethel EW, Rubin EM, Hamann B, Dubchak I.

Bioinformatics. 2004 Mar 22;20(5):636-43. Epub 2004 Jan 22.

15.

Paircomp, FamilyRelationsII and Cartwheel: tools for interspecific sequence comparison.

Brown CT, Xie Y, Davidson EH, Cameron RA.

BMC Bioinformatics. 2005 Mar 24;6:70.

16.

Installing and configuring CMap.

Faga B.

Curr Protoc Bioinformatics. 2007 Mar;Chapter 9:Unit 9.8. doi: 10.1002/0471250953.bi0908s17.

PMID:
18428796
17.

BACCardI--a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison.

Bartels D, Kespohl S, Albaum S, Drüke T, Goesmann A, Herold J, Kaiser O, Pühler A, Pfeiffer F, Raddatz G, Stoye J, Meyer F, Schuster SC.

Bioinformatics. 2005 Apr 1;21(7):853-9. Epub 2004 Oct 28.

18.

VisGenome: visualization of single and comparative genome representations.

Jakubowska J, Hunt E, Chalmers M, McBride M, Dominiczak AF.

Bioinformatics. 2007 Oct 1;23(19):2641-2.

19.

Using N-SCAN or TWINSCAN to predict gene structures in genomic DNA sequences.

van Baren MJ, Koebbe BC, Brent MR.

Curr Protoc Bioinformatics. 2007 Dec;Chapter 4:Unit 4.8. doi: 10.1002/0471250953.bi0408s20.

PMID:
18428682
20.

Ridom TraceEdit: a DNA trace editor and viewer.

Rothgänger J, Weniger M, Weniger T, Mellmann A, Harmsen D.

Bioinformatics. 2006 Feb 15;22(4):493-4. Epub 2005 Dec 15.

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