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Items: 1 to 20 of 92

1.
2.

Krox20 hindbrain cis-regulatory landscape: interplay between multiple long-range initiation and autoregulatory elements.

Chomette D, Frain M, Cereghini S, Charnay P, Ghislain J.

Development. 2006 Apr;133(7):1253-62. Epub 2006 Feb 22.

3.
4.
5.

Application of comparative genomics to the analysis of vertebrate regulatory elements.

Gilligan P, Venkatesh B.

Brief Funct Genomic Proteomic. 2004 Apr;3(1):7-11.

6.

Flexibility of transcription factor target site position in conserved cis-regulatory modules.

Cameron RA, Davidson EH.

Dev Biol. 2009 Dec 1;336(1):122-35. doi: 10.1016/j.ydbio.2009.09.018. Epub 2009 Sep 18.

7.

Combinatorial binding predicts spatio-temporal cis-regulatory activity.

Zinzen RP, Girardot C, Gagneur J, Braun M, Furlong EE.

Nature. 2009 Nov 5;462(7269):65-70. doi: 10.1038/nature08531.

PMID:
19890324
8.

Integrating genomic data to predict transcription factor binding.

Holloway DT, Kon M, DeLisi C.

Genome Inform. 2005;16(1):83-94.

PMID:
16362910
9.

Chance caught on the wing: cis-regulatory evolution and the origin of pigment patterns in Drosophila.

Gompel N, Prud'homme B, Wittkopp PJ, Kassner VA, Carroll SB.

Nature. 2005 Feb 3;433(7025):481-7.

PMID:
15690032
10.

A cis-regulatory signature in ascidians and flies, independent of transcription factor binding sites.

Khoueiry P, Rothbächer U, Ohtsuka Y, Daian F, Frangulian E, Roure A, Dubchak I, Lemaire P.

Curr Biol. 2010 May 11;20(9):792-802. doi: 10.1016/j.cub.2010.03.063. Epub 2010 Apr 29.

11.

Comparison of diverged Hoxc8 early enhancer activities reveals modification of regulatory interactions at conserved cis-acting elements.

Shashikant CS, Bolanowsky SA, Anand S, Anderson SM.

J Exp Zool B Mol Dev Evol. 2007 May 15;308(3):242-9.

PMID:
17171696
12.

Evolution of the mammalian transcription factor binding repertoire via transposable elements.

Bourque G, Leong B, Vega VB, Chen X, Lee YL, Srinivasan KG, Chew JL, Ruan Y, Wei CL, Ng HH, Liu ET.

Genome Res. 2008 Nov;18(11):1752-62. doi: 10.1101/gr.080663.108. Epub 2008 Aug 5.

13.

Expression of Hoxa2 in rhombomere 4 is regulated by a conserved cross-regulatory mechanism dependent upon Hoxb1.

Tümpel S, Cambronero F, Ferretti E, Blasi F, Wiedemann LM, Krumlauf R.

Dev Biol. 2007 Feb 15;302(2):646-60. Epub 2006 Oct 25.

14.

Phylogeny based discovery of regulatory elements.

Gertz J, Fay JC, Cohen BA.

BMC Bioinformatics. 2006 May 22;7:266.

15.

Long-range upstream and downstream enhancers control distinct subsets of the complex spatiotemporal Sox9 expression pattern.

Bagheri-Fam S, Barrionuevo F, Dohrmann U, Günther T, Schüle R, Kemler R, Mallo M, Kanzler B, Scherer G.

Dev Biol. 2006 Mar 15;291(2):382-97. Epub 2006 Feb 3.

17.

Genetics. Enhancing gene regulation.

Wray GA, Babbitt CC.

Science. 2008 Sep 5;321(5894):1300-1. doi: 10.1126/science.1163568. No abstract available.

PMID:
18772422
18.

Discovery of regulatory elements in vertebrates through comparative genomics.

Prakash A, Tompa M.

Nat Biotechnol. 2005 Oct;23(10):1249-56.

PMID:
16211068
19.

Functional importance of evolutionally conserved Tbx6 binding sites in the presomitic mesoderm-specific enhancer of Mesp2.

Yasuhiko Y, Kitajima S, Takahashi Y, Oginuma M, Kagiwada H, Kanno J, Saga Y.

Development. 2008 Nov;135(21):3511-9. doi: 10.1242/dev.027144.

20.

The enhanceosome.

Panne D.

Curr Opin Struct Biol. 2008 Apr;18(2):236-42. doi: 10.1016/j.sbi.2007.12.002. Epub 2008 Feb 21. Review.

PMID:
18206362
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