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Similar articles for PubMed (Select 15790569)

1.

Identification of estrogen-responsive genes using a genome-wide analysis of promoter elements for transcription factor binding sites.

Kamalakaran S, Radhakrishnan SK, Beck WT.

J Biol Chem. 2005 Jun 3;280(22):21491-7. Epub 2005 Mar 24.

3.

Genomic analyses of transcription factor binding, histone acetylation, and gene expression reveal mechanistically distinct classes of estrogen-regulated promoters.

Kininis M, Chen BS, Diehl AG, Isaacs GD, Zhang T, Siepel AC, Clark AG, Kraus WL.

Mol Cell Biol. 2007 Jul;27(14):5090-104. Epub 2007 May 21.

4.

CORE_TF: a user-friendly interface to identify evolutionary conserved transcription factor binding sites in sets of co-regulated genes.

Hestand MS, van Galen M, Villerius MP, van Ommen GJ, den Dunnen JT, 't Hoen PA.

BMC Bioinformatics. 2008 Nov 26;9:495. doi: 10.1186/1471-2105-9-495.

5.

CisView: a browser and database of cis-regulatory modules predicted in the mouse genome.

Sharov AA, Dudekula DB, Ko MS.

DNA Res. 2006 Jun 30;13(3):123-34. Epub 2006 Sep 15.

6.

Identification and cross-species comparison of canine osteoarthritic gene regulatory cis-elements.

Hannenhalli SS, Middleton RP, Levy S, Perroud B, Holzwarth JA, McDonald K, Hannah SS.

Osteoarthritis Cartilage. 2006 Aug;14(8):830-8. Epub 2006 Mar 31.

7.

Comparative promoter analysis and its application in analysis of PTH-regulated gene expression.

Qiu P, Qin L, Sorrentino RP, Greene JR, Wang L, Partridge NC.

J Mol Biol. 2003 Mar 7;326(5):1327-36. Erratum in: J Mol Biol. 2003 May 16;328(5):1197.

PMID:
12595247
9.

Identification of two functional estrogen response elements complexed with AP-1-like sites in the human insulin receptor gene promoter.

García-Arencibia M, Dávila N, Campión J, Carmen Carranza M, Calle C.

J Steroid Biochem Mol Biol. 2005 Feb;94(1-3):1-14. Epub 2005 Feb 3.

PMID:
15862945
10.

Identification of novel binding elements and gene targets for the homeodomain protein BARX2.

Stevens TA, Iacovoni JS, Edelman DB, Meech R.

J Biol Chem. 2004 Apr 9;279(15):14520-30. Epub 2004 Jan 26.

11.

KBERG: KnowledgeBase for Estrogen Responsive Genes.

Tang S, Zhang Z, Tan SL, Tang MH, Kumar AP, Ramadoss SK, Bajic VB.

Nucleic Acids Res. 2007 Jan;35(Database issue):D732-6. Epub 2006 Nov 7.

12.

Clusters of regulatory signals for RNA polymerase II transcription associated with Alu family repeats and CpG islands in human promoters.

Oei SL, Babich VS, Kazakov VI, Usmanova NM, Kropotov AV, Tomilin NV.

Genomics. 2004 May;83(5):873-82.

PMID:
15081116
13.

Computer-assisted identification of cell cycle-related genes: new targets for E2F transcription factors.

Kel AE, Kel-Margoulis OV, Farnham PJ, Bartley SM, Wingender E, Zhang MQ.

J Mol Biol. 2001 May 25;309(1):99-120.

PMID:
11491305
14.

Comparative promoter region analysis powered by CORG.

Dieterich C, Grossmann S, Tanzer A, Röpcke S, Arndt PF, Stadler PF, Vingron M.

BMC Genomics. 2005 Feb 21;6:24.

15.

Genome-wide analysis of factors regulating gene expression in liver.

Teufel A, Weinmann A, Krupp M, Budinger M, Galle PR.

Gene. 2007 Mar 15;389(2):114-21. Epub 2006 Nov 7.

PMID:
17174484
17.
18.

DoOPSearch: a web-based tool for finding and analysing common conserved motifs in the promoter regions of different chordate and plant genes.

Sebestyén E, Nagy T, Suhai S, Barta E.

BMC Bioinformatics. 2009 Jun 16;10 Suppl 6:S6. doi: 10.1186/1471-2105-10-S6-S6.

19.

CREME: Cis-Regulatory Module Explorer for the human genome.

Sharan R, Ben-Hur A, Loots GG, Ovcharenko I.

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W253-6.

20.
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