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Results: 1 to 20 of 409

1.

Genotyping over 100,000 SNPs on a pair of oligonucleotide arrays.

Matsuzaki H, Dong S, Loi H, Di X, Liu G, Hubbell E, Law J, Berntsen T, Chadha M, Hui H, Yang G, Kennedy GC, Webster TA, Cawley S, Walsh PS, Jones KW, Fodor SP, Mei R.

Nat Methods. 2004 Nov;1(2):109-11.

PMID:
15782172
[PubMed - indexed for MEDLINE]
2.

A highly informative SNP linkage panel for human genetic studies.

Murray SS, Oliphant A, Shen R, McBride C, Steeke RJ, Shannon SG, Rubano T, Kermani BG, Fan JB, Chee MS, Hansen MS.

Nat Methods. 2004 Nov;1(2):113-7. Epub 2004 Oct 21.

PMID:
15782173
[PubMed - indexed for MEDLINE]
3.

SNPs made routine.

Broman KW, Feingold E.

Nat Methods. 2004 Nov;1(2):104-5. No abstract available.

PMID:
15782170
[PubMed - indexed for MEDLINE]
4.

Dynamic model based algorithms for screening and genotyping over 100 K SNPs on oligonucleotide microarrays.

Di X, Matsuzaki H, Webster TA, Hubbell E, Liu G, Dong S, Bartell D, Huang J, Chiles R, Yang G, Shen MM, Kulp D, Kennedy GC, Mei R, Jones KW, Cawley S.

Bioinformatics. 2005 May 1;21(9):1958-63. Epub 2005 Jan 18.

PMID:
15657097
[PubMed - indexed for MEDLINE]
Free Article
5.

Large-scale genotyping of complex DNA.

Kennedy GC, Matsuzaki H, Dong S, Liu WM, Huang J, Liu G, Su X, Cao M, Chen W, Zhang J, Liu W, Yang G, Di X, Ryder T, He Z, Surti U, Phillips MS, Boyce-Jacino MT, Fodor SP, Jones KW.

Nat Biotechnol. 2003 Oct;21(10):1233-7. Epub 2003 Sep 7.

PMID:
12960966
[PubMed - indexed for MEDLINE]
6.

Assessing batch effects of genotype calling algorithm BRLMM for the Affymetrix GeneChip Human Mapping 500 K array set using 270 HapMap samples.

Hong H, Su Z, Ge W, Shi L, Perkins R, Fang H, Xu J, Chen JJ, Han T, Kaput J, Fuscoe JC, Tong W.

BMC Bioinformatics. 2008 Aug 12;9 Suppl 9:S17. doi: 10.1186/1471-2105-9-S9-S17.

PMID:
18793462
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Algorithms for large-scale genotyping microarrays.

Liu WM, Di X, Yang G, Matsuzaki H, Huang J, Mei R, Ryder TB, Webster TA, Dong S, Liu G, Jones KW, Kennedy GC, Kulp D.

Bioinformatics. 2003 Dec 12;19(18):2397-403.

PMID:
14668223
[PubMed - indexed for MEDLINE]
Free Article
8.

SNiPer: improved SNP genotype calling for Affymetrix 10K GeneChip microarray data.

Huentelman MJ, Craig DW, Shieh AD, Corneveaux JJ, Hu-Lince D, Pearson JV, Stephan DA.

BMC Genomics. 2005 Oct 31;6:149.

PMID:
16262895
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Whole genome genotyping technologies on the BeadArray platform.

Steemers FJ, Gunderson KL.

Biotechnol J. 2007 Jan;2(1):41-9.

PMID:
17225249
[PubMed - indexed for MEDLINE]
10.

Allelic dosage analysis with genotyping microarrays.

Ishikawa S, Komura D, Tsuji S, Nishimura K, Yamamoto S, Panda B, Huang J, Fukayama M, Jones KW, Aburatani H.

Biochem Biophys Res Commun. 2005 Aug 12;333(4):1309-14.

PMID:
15982637
[PubMed - indexed for MEDLINE]
11.

A self-tuning method for one-chip SNP identification.

Molla M, Shavlik J, Richmond T, Smith S.

Proc IEEE Comput Syst Bioinform Conf. 2004:69-79.

PMID:
16448001
[PubMed - indexed for MEDLINE]
12.

Effective algorithms for tag SNP selection.

Liu TF, Sung WK, Li Y, Liu JJ, Mittal A, Mao PL.

J Bioinform Comput Biol. 2005 Oct;3(5):1089-106.

PMID:
16278949
[PubMed - indexed for MEDLINE]
13.

High-throughput SNP genotyping by SBE/SBH.

Măndoiu II, Prăjescu C.

IEEE Trans Nanobioscience. 2007 Mar;6(1):28-35.

PMID:
17393847
[PubMed - indexed for MEDLINE]
14.

2SNP: scalable phasing based on 2-SNP haplotypes.

Brinza D, Zelikovsky A.

Bioinformatics. 2006 Feb 1;22(3):371-3. Epub 2005 Nov 15.

PMID:
16287933
[PubMed - indexed for MEDLINE]
Free Article
15.

Comparative analysis of haplotype association mapping algorithms.

McClurg P, Pletcher MT, Wiltshire T, Su AI.

BMC Bioinformatics. 2006 Feb 9;7:61.

PMID:
16466585
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Direct inference of SNP heterozygosity rates and resolution of LOH detection.

Li X, Self SG, Galipeau PC, Paulson TG, Reid BJ.

PLoS Comput Biol. 2007 Nov;3(11):e244.

PMID:
18052545
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

A new method for SNP discovery.

Xu JY, Xu GB, Chen SL.

Biotechniques. 2009 Mar;46(3):201-8. doi: 10.2144/000113075.

PMID:
19317663
[PubMed - indexed for MEDLINE]
Free Article
18.

Simulating association studies: a data-based resampling method for candidate regions or whole genome scans.

Wright FA, Huang H, Guan X, Gamiel K, Jeffries C, Barry WT, de Villena FP, Sullivan PF, Wilhelmsen KC, Zou F.

Bioinformatics. 2007 Oct 1;23(19):2581-8. Epub 2007 Sep 4.

PMID:
17785348
[PubMed - indexed for MEDLINE]
Free Article
19.

Estimating genotyping error rates from Mendelian errors in SNP array genotypes and their impact on inference.

Saunders IW, Brohede J, Hannan GN.

Genomics. 2007 Sep;90(3):291-6. Epub 2007 Jun 27.

PMID:
17587543
[PubMed - indexed for MEDLINE]
Free Article
20.

Automatic scoring and quality assessment using accuracy bounds for FP-TDI SNP genotyping data.

Kschischo M, Kern R, Gieger C, Steinhauser M, Tolle R.

Appl Bioinformatics. 2005;4(2):75-84.

PMID:
16128609
[PubMed - indexed for MEDLINE]

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