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Results: 1 to 20 of 593

1.

MBEToolbox: a MATLAB toolbox for sequence data analysis in molecular biology and evolution.

Cai JJ, Smith DK, Xia X, Yuen KY.

BMC Bioinformatics. 2005 Mar 22;6:64.

PMID:
15780146
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

MatArray: a Matlab toolbox for microarray data.

Venet D.

Bioinformatics. 2003 Mar 22;19(5):659-60.

PMID:
12651728
[PubMed - indexed for MEDLINE]
Free Article
3.

MBEToolbox 2.0: an enhanced version of a MATLAB toolbox for molecular biology and evolution.

Cai JJ, Smith DK, Xia X, Yuen KY.

Evol Bioinform Online. 2007 Feb 6;2:179-82.

PMID:
19455210
[PubMed]
Free PMC Article
4.

The Molecular Biology Toolkit (MBT): a modular platform for developing molecular visualization applications.

Moreland JL, Gramada A, Buzko OV, Zhang Q, Bourne PE.

BMC Bioinformatics. 2005 Feb 6;6:21.

PMID:
15694009
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Atlas - a data warehouse for integrative bioinformatics.

Shah SP, Huang Y, Xu T, Yuen MM, Ling J, Ouellette BF.

BMC Bioinformatics. 2005 Feb 21;6:34.

PMID:
15723693
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

HDBStat!: a platform-independent software suite for statistical analysis of high dimensional biology data.

Trivedi P, Edwards JW, Wang J, Gadbury GL, Srinivasasainagendra V, Zakharkin SO, Kim K, Mehta T, Brand JP, Patki A, Page GP, Allison DB.

BMC Bioinformatics. 2005 Apr 6;6:86.

PMID:
15813968
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

mGrid: a load-balanced distributed computing environment for the remote execution of the user-defined Matlab code.

Karpievitch YV, Almeida JS.

BMC Bioinformatics. 2006 Mar 15;7:139.

PMID:
16539707
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

SNPHunter: a bioinformatic software for single nucleotide polymorphism data acquisition and management.

Wang L, Liu S, Niu T, Xu X.

BMC Bioinformatics. 2005 Mar 18;6:60.

PMID:
15774022
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

MultiSeq: unifying sequence and structure data for evolutionary analysis.

Roberts E, Eargle J, Wright D, Luthey-Schulten Z.

BMC Bioinformatics. 2006 Aug 16;7:382.

PMID:
16914055
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

The design of Jemboss: a graphical user interface to EMBOSS.

Carver T, Bleasby A.

Bioinformatics. 2003 Sep 22;19(14):1837-43.

PMID:
14512356
[PubMed - indexed for MEDLINE]
Free Article
11.

MARS: microarray analysis, retrieval, and storage system.

Maurer M, Molidor R, Sturn A, Hartler J, Hackl H, Stocker G, Prokesch A, Scheideler M, Trajanoski Z.

BMC Bioinformatics. 2005 Apr 18;6:101.

PMID:
15836795
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

CGHPRO -- a comprehensive data analysis tool for array CGH.

Chen W, Erdogan F, Ropers HH, Lenzner S, Ullmann R.

BMC Bioinformatics. 2005 Apr 5;6:85.

PMID:
15807904
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

ISACGH: a web-based environment for the analysis of Array CGH and gene expression which includes functional profiling.

Conde L, Montaner D, Burguet-Castell J, Tárraga J, Medina I, Al-Shahrour F, Dopazo J.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W81-5. Epub 2007 Apr 27.

PMID:
17468499
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Alkahest NuclearBLAST : a user-friendly BLAST management and analysis system.

Diener SE, Houfek TD, Kalat SE, Windham DE, Burke M, Opperman C, Dean RA.

BMC Bioinformatics. 2005 Jun 15;6:147.

PMID:
15958161
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

SBMLToolbox: an SBML toolbox for MATLAB users.

Keating SM, Bornstein BJ, Finney A, Hucka M.

Bioinformatics. 2006 May 15;22(10):1275-7. Epub 2006 Mar 30.

PMID:
16574696
[PubMed - indexed for MEDLINE]
Free Article
16.

MILANO--custom annotation of microarray results using automatic literature searches.

Rubinstein R, Simon I.

BMC Bioinformatics. 2005 Jan 20;6:12.

PMID:
15661078
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

ArrayQuest: a web resource for the analysis of DNA microarray data.

Argraves GL, Jani S, Barth JL, Argraves WS.

BMC Bioinformatics. 2005 Dec 1;6:287.

PMID:
16321157
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Visualization methods for statistical analysis of microarray clusters.

Hibbs MA, Dirksen NC, Li K, Troyanskaya OG.

BMC Bioinformatics. 2005 May 12;6:115.

PMID:
15890080
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

JCell--a Java-based framework for inferring regulatory networks from time series data.

Spieth C, Supper J, Streichert F, Speer N, Zell A.

Bioinformatics. 2006 Aug 15;22(16):2051-2. Epub 2006 Jun 16.

PMID:
16782725
[PubMed - indexed for MEDLINE]
Free Article
20.

MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.

Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S.

Mol Biol Evol. 2011 Oct;28(10):2731-9. doi: 10.1093/molbev/msr121. Epub 2011 May 4.

PMID:
21546353
[PubMed - indexed for MEDLINE]
Free PMC Article

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