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Results: 1 to 20 of 58

1.

Ontology driven dynamic linking of biology resources.

Bechhofer SK, Stevens RD, Lord PW.

Pac Symp Biocomput. 2005:79-90.

PMID:
15759616
[PubMed - indexed for MEDLINE]
2.

The Gene Ontology in 2010: extensions and refinements.

Gene Ontology Consortium.

Nucleic Acids Res. 2010 Jan;38(Database issue):D331-5. doi: 10.1093/nar/gkp1018. Epub 2009 Nov 17.

PMID:
19920128
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

OLS dialog: an open-source front end to the ontology lookup service.

Barsnes H, Côté RG, Eidhammer I, Martens L.

BMC Bioinformatics. 2010 Jan 17;11:34. doi: 10.1186/1471-2105-11-34.

PMID:
20078892
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Comparison of concept recognizers for building the Open Biomedical Annotator.

Shah NH, Bhatia N, Jonquet C, Rubin D, Chiang AP, Musen MA.

BMC Bioinformatics. 2009 Sep 17;10 Suppl 9:S14. doi: 10.1186/1471-2105-10-S9-S14.

PMID:
19761568
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

OILing the way to machine understandable bioinformatics resources.

Stevens R, Goble C, Horrocks I, Bechhofer S.

IEEE Trans Inf Technol Biomed. 2002 Jun;6(2):129-34.

PMID:
12075667
[PubMed - indexed for MEDLINE]
6.

Non-lexical approaches to identifying associative relations in the gene ontology.

Bodenreider O, Aubry M, Burgun A.

Pac Symp Biocomput. 2005:91-102.

PMID:
15759617
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Applications and methods utilizing the Simple Semantic Web Architecture and Protocol (SSWAP) for bioinformatics resource discovery and disparate data and service integration.

Nelson RT, Avraham S, Shoemaker RC, May GD, Ware D, Gessler DD.

BioData Min. 2010 Jun 4;3(1):3. doi: 10.1186/1756-0381-3-3.

PMID:
20525377
[PubMed]
Free PMC Article
8.

The Gene Ontology (GO) project: structured vocabularies for molecular biology and their application to genome and expression analysis.

Blake JA, Harris MA.

Curr Protoc Bioinformatics. 2008 Sep;Chapter 7:Unit 7.2. doi: 10.1002/0471250953.bi0702s23.

PMID:
18819077
[PubMed - indexed for MEDLINE]
9.

OnEX: Exploring changes in life science ontologies.

Hartung M, Kirsten T, Gross A, Rahm E.

BMC Bioinformatics. 2009 Aug 13;10:250. doi: 10.1186/1471-2105-10-250.

PMID:
19678926
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

FuncBase: a resource for quantitative gene function annotation.

Beaver JE, Tasan M, Gibbons FD, Tian W, Hughes TR, Roth FP.

Bioinformatics. 2010 Jul 15;26(14):1806-7. doi: 10.1093/bioinformatics/btq265. Epub 2010 May 21.

PMID:
20495000
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

The ontology of the gene ontology.

Smith B, Williams J, Schulze-Kremer S.

AMIA Annu Symp Proc. 2003:609-13.

PMID:
14728245
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

The Gene Ontology: enhancements for 2011.

Gene Ontology Consortium.

Nucleic Acids Res. 2012 Jan;40(Database issue):D559-64. doi: 10.1093/nar/gkr1028. Epub 2011 Nov 18.

PMID:
22102568
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Creating the gene ontology resource: design and implementation.

Gene Ontology Consortium.

Genome Res. 2001 Aug;11(8):1425-33.

PMID:
11483584
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Ontology-based knowledge representation for bioinformatics.

Stevens R, Goble CA, Bechhofer S.

Brief Bioinform. 2000 Nov;1(4):398-414. Review.

PMID:
11465057
[PubMed - indexed for MEDLINE]
Free Article
15.

Modeling sample variables with an Experimental Factor Ontology.

Malone J, Holloway E, Adamusiak T, Kapushesky M, Zheng J, Kolesnikov N, Zhukova A, Brazma A, Parkinson H.

Bioinformatics. 2010 Apr 15;26(8):1112-8. doi: 10.1093/bioinformatics/btq099. Epub 2010 Mar 3.

PMID:
20200009
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

A compilation of molecular biology web servers: 2006 update on the Bioinformatics Links Directory.

Fox JA, McMillan S, Ouellette BF.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W3-5.

PMID:
16845014
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Moby and Moby 2: creatures of the deep (web).

Vandervalk BP, McCarthy EL, Wilkinson MD.

Brief Bioinform. 2009 Mar;10(2):114-28. doi: 10.1093/bib/bbn051. Epub 2009 Jan 16.

PMID:
19151099
[PubMed - indexed for MEDLINE]
Free Article
18.

Seahawk: moving beyond HTML in Web-based bioinformatics analysis.

Gordon PM, Sensen CW.

BMC Bioinformatics. 2007 Jun 18;8:208.

PMID:
17577405
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Methods for gene ontology annotation.

Dimmer E, Berardini TZ, Barrell D, Camon E.

Methods Mol Biol. 2007;406:495-520.

PMID:
18287709
[PubMed - indexed for MEDLINE]
20.

A network-theoretic approach for decompositional translation across Open Biological Ontologies.

Patel CO, Cimino JJ.

J Biomed Inform. 2010 Aug;43(4):608-12. doi: 10.1016/j.jbi.2010.01.007. Epub 2010 Feb 6.

PMID:
20144734
[PubMed - indexed for MEDLINE]
Free PMC Article

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