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Results: 1 to 20 of 368

1.

Structural comparison of metabolic networks in selected single cell organisms.

Zhu D, Qin ZS.

BMC Bioinformatics. 2005 Jan 14;6:8.

PMID:
15649332
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Properties of metabolic networks: structure versus function.

Mahadevan R, Palsson BO.

Biophys J. 2005 Jan;88(1):L07-9. Epub 2004 Dec 1. Erratum in: Biophys J. 2006 Jan 15;90(2):708.

PMID:
15574705
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Exploring local structural organization of metabolic networks using subgraph patterns.

Eom YH, Lee S, Jeong H.

J Theor Biol. 2006 Aug 21;241(4):823-9. Epub 2006 Feb 28.

PMID:
16504210
[PubMed - indexed for MEDLINE]
4.

A cross species comparison of metabolic network functions.

Ebenhöh O, Handorf T, Heinrich R.

Genome Inform. 2005;16(1):203-13.

PMID:
16362923
[PubMed - indexed for MEDLINE]
5.

Correlation and prediction of gene expression level from amino acid and dipeptide composition of its protein.

Raghava GP, Han JH.

BMC Bioinformatics. 2005 Mar 17;6:59.

PMID:
15773999
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Fitting a geometric graph to a protein-protein interaction network.

Higham DJ, Rasajski M, Przulj N.

Bioinformatics. 2008 Apr 15;24(8):1093-9. doi: 10.1093/bioinformatics/btn079. Epub 2008 Mar 14.

PMID:
18344248
[PubMed - indexed for MEDLINE]
Free Article
7.

Visualizing global properties of large complex networks.

Li W, Kurata H.

PLoS One. 2008 Jul 2;3(7):e2541. doi: 10.1371/journal.pone.0002541.

PMID:
18648531
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Reconstruction of metabolic networks from genome data and analysis of their global structure for various organisms.

Ma H, Zeng AP.

Bioinformatics. 2003 Jan 22;19(2):270-7.

PMID:
12538249
[PubMed - indexed for MEDLINE]
Free Article
9.

Integrated analysis of multiple data sources reveals modular structure of biological networks.

Lu H, Shi B, Wu G, Zhang Y, Zhu X, Zhang Z, Liu C, Zhao Y, Wu T, Wang J, Chen R.

Biochem Biophys Res Commun. 2006 Jun 23;345(1):302-9. Epub 2006 Apr 27.

PMID:
16690033
[PubMed - indexed for MEDLINE]
10.

2.5D visualisation of overlapping biological networks.

Fung DC, Hong SH, Koschützki D, Schreiber F, Xu K.

J Integr Bioinform. 2008 Nov 10;5(1). doi: 10.2390/biecoll-jib-2008-90.

PMID:
20134057
[PubMed - indexed for MEDLINE]
11.

The connectivity structure, giant strong component and centrality of metabolic networks.

Ma HW, Zeng AP.

Bioinformatics. 2003 Jul 22;19(11):1423-30.

PMID:
12874056
[PubMed - indexed for MEDLINE]
Free Article
12.

Development and implementation of an algorithm for detection of protein complexes in large interaction networks.

Altaf-Ul-Amin M, Shinbo Y, Mihara K, Kurokawa K, Kanaya S.

BMC Bioinformatics. 2006 Apr 14;7:207.

PMID:
16613608
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Architecture of basic building blocks in protein and domain structural interaction networks.

Moon HS, Bhak J, Lee KH, Lee D.

Bioinformatics. 2005 Apr 15;21(8):1479-86. Epub 2004 Dec 21.

PMID:
15613386
[PubMed - indexed for MEDLINE]
Free Article
14.

Combining bioinformatics resources for the structural modelling of eukaryotic metabolic networks.

Gille C, Hoffmann S, Holzhütter HG.

Genome Inform. 2005;16(1):223-32.

PMID:
16362925
[PubMed - indexed for MEDLINE]
15.

Hierarchical modularity of nested bow-ties in metabolic networks.

Zhao J, Yu H, Luo JH, Cao ZW, Li YX.

BMC Bioinformatics. 2006 Aug 18;7:386.

PMID:
16916470
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Mining bridge and brick motifs from complex biological networks for functionally and statistically significant discovery.

Cheng CY, Huang CY, Sun CT.

IEEE Trans Syst Man Cybern B Cybern. 2008 Feb;38(1):17-24. doi: 10.1109/TSMCB.2007.908842.

PMID:
18270079
[PubMed - indexed for MEDLINE]
17.

Biological network comparison using graphlet degree distribution.

Przulj N.

Bioinformatics. 2007 Jan 15;23(2):e177-83. Erratum in: Bioinformatics. 2010 Mar 15;26(6):853-4.

PMID:
17237089
[PubMed - indexed for MEDLINE]
Free Article
18.

Challenges to be faced in the reconstruction of metabolic networks from public databases.

Poolman MG, Bonde BK, Gevorgyan A, Patel HH, Fell DA.

Syst Biol (Stevenage). 2006 Sep;153(5):379-84.

PMID:
16986322
[PubMed - indexed for MEDLINE]
19.

A genomewide functional network for the laboratory mouse.

Guan Y, Myers CL, Lu R, Lemischka IR, Bult CJ, Troyanskaya OG.

PLoS Comput Biol. 2008 Sep 26;4(9):e1000165. doi: 10.1371/journal.pcbi.1000165.

PMID:
18818725
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

The large-scale organization of metabolic networks.

Jeong H, Tombor B, Albert R, Oltvai ZN, Barabási AL.

Nature. 2000 Oct 5;407(6804):651-4.

PMID:
11034217
[PubMed - indexed for MEDLINE]

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