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Results: 1 to 20 of 243

1.

The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis.

Pearl F, Todd A, Sillitoe I, Dibley M, Redfern O, Lewis T, Bennett C, Marsden R, Grant A, Lee D, Akpor A, Maibaum M, Harrison A, Dallman T, Reeves G, Diboun I, Addou S, Lise S, Johnston C, Sillero A, Thornton J, Orengo C.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D247-51.

PMID:
15608188
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

The CATH database: an extended protein family resource for structural and functional genomics.

Pearl FM, Bennett CF, Bray JE, Harrison AP, Martin N, Shepherd A, Sillitoe I, Thornton J, Orengo CA.

Nucleic Acids Res. 2003 Jan 1;31(1):452-5.

PMID:
12520050
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

A rapid classification protocol for the CATH Domain Database to support structural genomics.

Pearl FM, Martin N, Bray JE, Buchan DW, Harrison AP, Lee D, Reeves GA, Shepherd AJ, Sillitoe I, Todd AE, Thornton JM, Orengo CA.

Nucleic Acids Res. 2001 Jan 1;29(1):223-7.

PMID:
11125098
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

The CATH domain structure database: new protocols and classification levels give a more comprehensive resource for exploring evolution.

Greene LH, Lewis TE, Addou S, Cuff A, Dallman T, Dibley M, Redfern O, Pearl F, Nambudiry R, Reid A, Sillitoe I, Yeats C, Thornton JM, Orengo CA.

Nucleic Acids Res. 2007 Jan;35(Database issue):D291-7. Epub 2006 Nov 29.

PMID:
17135200
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Gene3D: comprehensive structural and functional annotation of genomes.

Yeats C, Lees J, Reid A, Kellam P, Martin N, Liu X, Orengo C.

Nucleic Acids Res. 2008 Jan;36(Database issue):D414-8. Epub 2007 Nov 21.

PMID:
18032434
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Assigning genomic sequences to CATH.

Pearl FM, Lee D, Bray JE, Sillitoe I, Todd AE, Harrison AP, Thornton JM, Orengo CA.

Nucleic Acids Res. 2000 Jan 1;28(1):277-82.

PMID:
10592246
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

The CATH extended protein-family database: providing structural annotations for genome sequences.

Pearl FM, Lee D, Bray JE, Buchan DW, Shepherd AJ, Orengo CA.

Protein Sci. 2002 Feb;11(2):233-44.

PMID:
11790833
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Gene3D: structural assignments for the biologist and bioinformaticist alike.

Buchan DW, Rison SC, Bray JE, Lee D, Pearl F, Thornton JM, Orengo CA.

Nucleic Acids Res. 2003 Jan 1;31(1):469-73.

PMID:
12520054
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Identification and distribution of protein families in 120 completed genomes using Gene3D.

Lee D, Grant A, Marsden RL, Orengo C.

Proteins. 2005 May 15;59(3):603-15.

PMID:
15768405
[PubMed - indexed for MEDLINE]
10.

Classifying a protein in the CATH database of domain structures.

Orengo CA, Martin AM, Hutchinson G, Jones S, Jones DT, Michie AD, Swindells MB, Thornton JM.

Acta Crystallogr D Biol Crystallogr. 1998 Nov 1;54(Pt 6 Pt 1):1155-67.

PMID:
10089492
[PubMed - indexed for MEDLINE]
11.

The CATH Dictionary of Homologous Superfamilies (DHS): a consensus approach for identifying distant structural homologues.

Bray JE, Todd AE, Pearl FM, Thornton JM, Orengo CA.

Protein Eng. 2000 Mar;13(3):153-65.

PMID:
10775657
[PubMed - indexed for MEDLINE]
Free Article
12.

Gene3D: Multi-domain annotations for protein sequence and comparative genome analysis.

Lees JG, Lee D, Studer RA, Dawson NL, Sillitoe I, Das S, Yeats C, Dessailly BH, Rentzsch R, Orengo CA.

Nucleic Acids Res. 2014 Jan;42(Database issue):D240-5. doi: 10.1093/nar/gkt1205. Epub 2013 Nov 21.

PMID:
24270792
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Recognizing the fold of a protein structure.

Harrison A, Pearl F, Sillitoe I, Slidel T, Mott R, Thornton J, Orengo C.

Bioinformatics. 2003 Sep 22;19(14):1748-59.

PMID:
14512345
[PubMed - indexed for MEDLINE]
Free Article
14.

Gene3D: merging structure and function for a Thousand genomes.

Lees J, Yeats C, Redfern O, Clegg A, Orengo C.

Nucleic Acids Res. 2010 Jan;38(Database issue):D296-300. doi: 10.1093/nar/gkp987. Epub 2009 Nov 11.

PMID:
19906693
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Gene3D: modelling protein structure, function and evolution.

Yeats C, Maibaum M, Marsden R, Dibley M, Lee D, Addou S, Orengo CA.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D281-4.

PMID:
16381865
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Gene3D: a domain-based resource for comparative genomics, functional annotation and protein network analysis.

Lees J, Yeats C, Perkins J, Sillitoe I, Rentzsch R, Dessailly BH, Orengo C.

Nucleic Acids Res. 2012 Jan;40(Database issue):D465-71. doi: 10.1093/nar/gkr1181. Epub 2011 Dec 1. Erratum in: Nucleic Acids Res. 2012 May;40(10):4725.

PMID:
22139938
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Gene3D: structural assignment for whole genes and genomes using the CATH domain structure database.

Buchan DW, Shepherd AJ, Lee D, Pearl FM, Rison SC, Thornton JM, Orengo CA.

Genome Res. 2002 Mar;12(3):503-14.

PMID:
11875040
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Structural diversity of domain superfamilies in the CATH database.

Reeves GA, Dallman TJ, Redfern OC, Akpor A, Orengo CA.

J Mol Biol. 2006 Jul 14;360(3):725-41. Epub 2006 Jun 2.

PMID:
16780872
[PubMed - indexed for MEDLINE]
19.

Assessing strategies for improved superfamily recognition.

Sillitoe I, Dibley M, Bray J, Addou S, Orengo C.

Protein Sci. 2005 Jul;14(7):1800-10. Epub 2005 Jun 3.

PMID:
15937274
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

The CATH Database provides insights into protein structure/function relationships.

Orengo CA, Pearl FM, Bray JE, Todd AE, Martin AC, Lo Conte L, Thornton JM.

Nucleic Acids Res. 1999 Jan 1;27(1):275-9.

PMID:
9847200
[PubMed - indexed for MEDLINE]
Free PMC Article
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