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Similar articles for PubMed (Select 15608047)

1.

RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees.

Stamatakis A, Ludwig T, Meier H.

Bioinformatics. 2005 Feb 15;21(4):456-63. Epub 2004 Dec 17.

2.

A rapid bootstrap algorithm for the RAxML Web servers.

Stamatakis A, Hoover P, Rougemont J.

Syst Biol. 2008 Oct;57(5):758-71. doi: 10.1080/10635150802429642.

PMID:
18853362
3.

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models.

Stamatakis A.

Bioinformatics. 2006 Nov 1;22(21):2688-90. Epub 2006 Aug 23.

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Algorithms, data structures, and numerics for likelihood-based phylogenetic inference of huge trees.

Izquierdo-Carrasco F, Smith SA, Stamatakis A.

BMC Bioinformatics. 2011 Dec 13;12:470. doi: 10.1186/1471-2105-12-470.

7.

Upper bounds on maximum likelihood for phylogenetic trees.

Hendy MD, Holland BR.

Bioinformatics. 2003 Oct;19 Suppl 2:ii66-72.

8.

Genetic algorithm-based maximum-likelihood analysis for molecular phylogeny.

Katoh K, Kuma K, Miyata T.

J Mol Evol. 2001 Oct-Nov;53(4-5):477-84.

PMID:
11675608
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12.

Improving the efficiency of SPR moves in phylogenetic tree search methods based on maximum likelihood.

Hordijk W, Gascuel O.

Bioinformatics. 2005 Dec 15;21(24):4338-47. Epub 2005 Oct 18.

14.

Reconstructing phylogeny by quadratically approximated maximum likelihood.

Woodhams MD, Hendy MD.

Bioinformatics. 2004 Aug 4;20 Suppl 1:i348-54.

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apTreeshape: statistical analysis of phylogenetic tree shape.

Bortolussi N, Durand E, Blum M, Fran├žois O.

Bioinformatics. 2006 Feb 1;22(3):363-4. Epub 2005 Dec 1.

17.

On the quality of tree-based protein classification.

Lazareva-Ulitsky B, Diemer K, Thomas PD.

Bioinformatics. 2005 May 1;21(9):1876-90. Epub 2005 Jan 12.

18.

A congruence index for testing topological similarity between trees.

de Vienne DM, Giraud T, Martin OC.

Bioinformatics. 2007 Dec 1;23(23):3119-24. Epub 2007 Oct 12.

19.

PHYML Online--a web server for fast maximum likelihood-based phylogenetic inference.

Guindon S, Lethiec F, Duroux P, Gascuel O.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W557-9.

20.

BEAST: Bayesian evolutionary analysis by sampling trees.

Drummond AJ, Rambaut A.

BMC Evol Biol. 2007 Nov 8;7:214.

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