Items per page
Sort by

Send to:

Choose Destination

Links from PubMed

Items: 1 to 20 of 201


MedKit: a helper toolkit for automatic mining of MEDLINE/PubMed citations.

Ding J, Berleant D.

Bioinformatics. 2005 Mar 1;21(5):694-5. Epub 2004 Oct 27.


Protein annotation by EBIMed.

Rebholz-Schuhmann D, Kirsch H, Arregui M, Gaudan S, Rynbeek M, Stoehr P.

Nat Biotechnol. 2006 Aug;24(8):902-3. No abstract available.


Text processing through Web services: calling Whatizit.

Rebholz-Schuhmann D, Arregui M, Gaudan S, Kirsch H, Jimeno A.

Bioinformatics. 2008 Jan 15;24(2):296-8. Epub 2007 Nov 15.


Text similarity: an alternative way to search MEDLINE.

Lewis J, Ossowski S, Hicks J, Errami M, Garner HR.

Bioinformatics. 2006 Sep 15;22(18):2298-304. Epub 2006 Aug 22.


MedlineR: an open source library in R for Medline literature data mining.

Lin SM, McConnell P, Johnson KF, Shoemaker J.

Bioinformatics. 2004 Dec 12;20(18):3659-61. Epub 2004 Jul 29.


AliBaba: PubMed as a graph.

Plake C, Schiemann T, Pankalla M, Hakenberg J, Leser U.

Bioinformatics. 2006 Oct 1;22(19):2444-5. Epub 2006 Jul 26.


Using the biological taxonomy to access biological literature with PathBinderH.

Ding J, Viswanathan K, Berleant D, Hughes L, Wurtele ES, Ashlock D, Dickerson JA, Fulmer A, Schnable PS.

Bioinformatics. 2005 May 15;21(10):2560-2. Epub 2005 Mar 15.


MedEvi: retrieving textual evidence of relations between biomedical concepts from Medline.

Kim JJ, Pezik P, Rebholz-Schuhmann D.

Bioinformatics. 2008 Jun 1;24(11):1410-2. doi: 10.1093/bioinformatics/btn117. Epub 2008 Apr 9.


GIS: a biomedical text-mining system for gene information discovery.

Chiang JH, Yu HC, Hsu HJ.

Bioinformatics. 2004 Jan 1;20(1):120-1.


Discovering patterns to extract protein-protein interactions from the literature: Part II.

Hao Y, Zhu X, Huang M, Li M.

Bioinformatics. 2005 Aug 1;21(15):3294-300. Epub 2005 May 12.


Distributed modules for text annotation and IE applied to the biomedical domain.

Kirsch H, Gaudan S, Rebholz-Schuhmann D.

Int J Med Inform. 2006 Jun;75(6):496-500. Epub 2005 Aug 8.


A survey of current work in biomedical text mining.

Cohen AM, Hersh WR.

Brief Bioinform. 2005 Mar;6(1):57-71. Review.


Literature mining and database annotation of protein phosphorylation using a rule-based system.

Hu ZZ, Narayanaswamy M, Ravikumar KE, Vijay-Shanker K, Wu CH.

Bioinformatics. 2005 Jun 1;21(11):2759-65. Epub 2005 Apr 6.


PubSearch and PubFetch: a simple management system for semiautomated retrieval and annotation of biological information from the literature.

Yoo D, Xu I, Berardini TZ, Rhee SY, Narayanasamy V, Twigger S.

Curr Protoc Bioinformatics. 2006 Mar;Chapter 9:Unit9.7. doi: 10.1002/0471250953.bi0907s13.


An entity tagger for recognizing acquired genomic variations in cancer literature.

McDonald RT, Winters RS, Mandel M, Jin Y, White PS, Pereira F.

Bioinformatics. 2004 Nov 22;20(17):3249-51. Epub 2004 Jun 4.


ABNER: an open source tool for automatically tagging genes, proteins and other entity names in text.

Settles B.

Bioinformatics. 2005 Jul 15;21(14):3191-2. Epub 2005 Apr 28.


Gene symbol disambiguation using knowledge-based profiles.

Xu H, Fan JW, Hripcsak G, Mendonça EA, Markatou M, Friedman C.

Bioinformatics. 2007 Apr 15;23(8):1015-22. Epub 2007 Feb 21.


MedScan, a natural language processing engine for MEDLINE abstracts.

Novichkova S, Egorov S, Daraselia N.

Bioinformatics. 2003 Sep 1;19(13):1699-706.


An active visual search interface for Medline.

Xuan W, Dai M, Mirel B, Wilson J, Athey B, Watson SJ, Meng F.

Comput Syst Bioinformatics Conf. 2007;6:359-69.


MedPost: a part-of-speech tagger for bioMedical text.

Smith L, Rindflesch T, Wilbur WJ.

Bioinformatics. 2004 Sep 22;20(14):2320-1. Epub 2004 Apr 8.

Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Write to the Help Desk