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Results: 1 to 20 of 771

1.

Textpresso: an ontology-based information retrieval and extraction system for biological literature.

Müller HM, Kenny EE, Sternberg PW.

PLoS Biol. 2004 Nov;2(11):e309. Epub 2004 Sep 21.

PMID:
15383839
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Semi-automated curation of protein subcellular localization: a text mining-based approach to Gene Ontology (GO) Cellular Component curation.

Van Auken K, Jaffery J, Chan J, Müller HM, Sternberg PW.

BMC Bioinformatics. 2009 Jul 21;10:228. doi: 10.1186/1471-2105-10-228.

PMID:
19622167
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Textpresso for neuroscience: searching the full text of thousands of neuroscience research papers.

Müller HM, Rangarajan A, Teal TK, Sternberg PW.

Neuroinformatics. 2008 Sep;6(3):195-204. doi: 10.1007/s12021-008-9031-0. Epub 2008 Oct 24.

PMID:
18949581
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Text-mining of PubMed abstracts by natural language processing to create a public knowledge base on molecular mechanisms of bacterial enteropathogens.

Zaremba S, Ramos-Santacruz M, Hampton T, Shetty P, Fedorko J, Whitmore J, Greene JM, Perna NT, Glasner JD, Plunkett G 3rd, Shaker M, Pot D.

BMC Bioinformatics. 2009 Jun 10;10:177. doi: 10.1186/1471-2105-10-177.

PMID:
19515247
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Ranking the whole MEDLINE database according to a large training set using text indexing.

Suomela BP, Andrade MA.

BMC Bioinformatics. 2005 Mar 24;6:75.

PMID:
15790421
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Automatic document classification of biological literature.

Chen D, Müller HM, Sternberg PW.

BMC Bioinformatics. 2006 Aug 7;7:370.

PMID:
16893465
[PubMed - indexed for MEDLINE]
Free PMC Article
7.
8.

The BioPrompt-box: an ontology-based clustering tool for searching in biological databases.

Corsi C, Ferragina P, Marangoni R.

BMC Bioinformatics. 2007 Mar 8;8 Suppl 1:S8.

PMID:
17430575
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Building a protein name dictionary from full text: a machine learning term extraction approach.

Shi L, Campagne F.

BMC Bioinformatics. 2005 Apr 7;6:88.

PMID:
15817129
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

MILANO--custom annotation of microarray results using automatic literature searches.

Rubinstein R, Simon I.

BMC Bioinformatics. 2005 Jan 20;6:12.

PMID:
15661078
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Text processing through Web services: calling Whatizit.

Rebholz-Schuhmann D, Arregui M, Gaudan S, Kirsch H, Jimeno A.

Bioinformatics. 2008 Jan 15;24(2):296-8. Epub 2007 Nov 15.

PMID:
18006544
[PubMed - indexed for MEDLINE]
Free Article
12.

Semantically linking and browsing PubMed abstracts with gene ontology.

Vanteru BC, Shaik JS, Yeasin M.

BMC Genomics. 2008;9 Suppl 1:S10. doi: 10.1186/1471-2164-9-S1-S10.

PMID:
18366599
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

BioRAT: extracting biological information from full-length papers.

Corney DP, Buxton BF, Langdon WB, Jones DT.

Bioinformatics. 2004 Nov 22;20(17):3206-13. Epub 2004 Jul 1.

PMID:
15231534
[PubMed - indexed for MEDLINE]
Free Article
14.

pubmed2ensembl: a resource for mining the biological literature on genes.

Baran J, Gerner M, Haeussler M, Nenadic G, Bergman CM.

PLoS One. 2011;6(9):e24716. doi: 10.1371/journal.pone.0024716. Epub 2011 Sep 29.

PMID:
21980353
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

An evaluation of GO annotation retrieval for BioCreAtIvE and GOA.

Camon EB, Barrell DG, Dimmer EC, Lee V, Magrane M, Maslen J, Binns D, Apweiler R.

BMC Bioinformatics. 2005;6 Suppl 1:S17. Epub 2005 May 24.

PMID:
15960829
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

PhenoGO: assigning phenotypic context to gene ontology annotations with natural language processing.

Lussier Y, Borlawsky T, Rappaport D, Liu Y, Friedman C.

Pac Symp Biocomput. 2006:64-75.

PMID:
17094228
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Gene name identification and normalization using a model organism database.

Morgan AA, Hirschman L, Colosimo M, Yeh AS, Colombe JB.

J Biomed Inform. 2004 Dec;37(6):396-410.

PMID:
15542014
[PubMed - indexed for MEDLINE]
Free Article
18.

WormBase: a multi-species resource for nematode biology and genomics.

Harris TW, Chen N, Cunningham F, Tello-Ruiz M, Antoshechkin I, Bastiani C, Bieri T, Blasiar D, Bradnam K, Chan J, Chen CK, Chen WJ, Davis P, Kenny E, Kishore R, Lawson D, Lee R, Muller HM, Nakamura C, Ozersky P, Petcherski A, Rogers A, Sabo A, Schwarz EM, Van Auken K, Wang Q, Durbin R, Spieth J, Sternberg PW, Stein LD.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D411-7.

PMID:
14681445
[PubMed - indexed for MEDLINE]
Free PMC Article
19.
20.

Assessment of disease named entity recognition on a corpus of annotated sentences.

Jimeno A, Jimenez-Ruiz E, Lee V, Gaudan S, Berlanga R, Rebholz-Schuhmann D.

BMC Bioinformatics. 2008 Apr 11;9 Suppl 3:S3. doi: 10.1186/1471-2105-9-S3-S3.

PMID:
18426548
[PubMed - indexed for MEDLINE]
Free PMC Article

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