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Results: 1 to 20 of 107

1.

Supersequences of masks for oligo-chips.

Guénoche A.

J Bioinform Comput Biol. 2004 Sep;2(3):459-69.

PMID:
15359421
[PubMed - indexed for MEDLINE]
2.

Fast large scale oligonucleotide selection using the longest common factor approach.

Rahmann S.

J Bioinform Comput Biol. 2003 Jul;1(2):343-61.

PMID:
15290776
[PubMed - indexed for MEDLINE]
3.

The shortest common supersequence problem in a microarray production setting.

Rahmann S.

Bioinformatics. 2003 Oct;19 Suppl 2:ii156-61.

PMID:
14534185
[PubMed - indexed for MEDLINE]
Free Article
4.

Rapid large-scale oligonucleotide selection for microarrays.

Rahmann S.

Proc IEEE Comput Soc Bioinform Conf. 2002;1:54-63.

PMID:
15838123
[PubMed - indexed for MEDLINE]
5.

Achieving differentiation of single-base mutations through hairpin oligonucleotide and electric potential control.

Wei F, Sun B, Liao W, Ouyang J, Sheng Zhao X.

Biosens Bioelectron. 2003 Aug 15;18(9):1149-55.

PMID:
12788557
[PubMed - indexed for MEDLINE]
6.

YODA: selecting signature oligonucleotides.

Nordberg EK.

Bioinformatics. 2005 Apr 15;21(8):1365-70. Epub 2004 Nov 30.

PMID:
15572465
[PubMed - indexed for MEDLINE]
Free Article
7.

Oligo Design: a computer program for development of probes for oligonucleotide microarrays.

Herold KE, Rasooly A.

Biotechniques. 2003 Dec;35(6):1216-21.

PMID:
14682056
[PubMed - indexed for MEDLINE]
8.

Efficient selection of unique and popular oligos for large EST databases.

Zheng J, Close TJ, Jiang T, Lonardi S.

Bioinformatics. 2004 Sep 1;20(13):2101-12. Epub 2004 Apr 1.

PMID:
15059835
[PubMed - indexed for MEDLINE]
Free Article
9.

Blocking oligo--a novel approach for improving chip-based DNA hybridization efficiency.

Tao SC, Gao HF, Cao F, Ma XM, Cheng J.

Mol Cell Probes. 2003 Aug;17(4):197-202.

PMID:
12944123
[PubMed - indexed for MEDLINE]
10.

SNPs made routine.

Broman KW, Feingold E.

Nat Methods. 2004 Nov;1(2):104-5. No abstract available.

PMID:
15782170
[PubMed - indexed for MEDLINE]
11.

EC_oligos: automated and whole-genome primer design for exons within one or between two genomes.

Liu S, Tinker NA, Molnar SJ, Mather DE.

Bioinformatics. 2004 Dec 12;20(18):3668-9. Epub 2004 Jul 22.

PMID:
15271776
[PubMed - indexed for MEDLINE]
Free Article
12.

Selection of long oligonucleotides for gene expression microarrays using weighted rank-sum strategy.

Hu G, Llinás M, Li J, Preiser PR, Bozdech Z.

BMC Bioinformatics. 2007 Sep 19;8:350.

PMID:
17880708
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Computing highly specific and noise-tolerant oligomers efficiently.

Yamada T, Morishita S.

J Bioinform Comput Biol. 2004 Mar;2(1):21-46.

PMID:
15272431
[PubMed - indexed for MEDLINE]
14.

Selection of optimal DNA oligos for gene expression arrays.

Li F, Stormo GD.

Bioinformatics. 2001 Nov;17(11):1067-76.

PMID:
11724738
[PubMed - indexed for MEDLINE]
Free Article
15.

Decoding non-unique oligonucleotide hybridization experiments of targets related by a phylogenetic tree.

Schliep A, Rahmann S.

Bioinformatics. 2006 Jul 15;22(14):e424-30.

PMID:
16873503
[PubMed - indexed for MEDLINE]
Free Article
16.

Better genechip microarray layouts by combining probe placement and embedding.

de Carvalho SA Jr, Rahmann S.

J Bioinform Comput Biol. 2008 Jun;6(3):623-41.

PMID:
18574866
[PubMed - indexed for MEDLINE]
17.

Optimal robust non-unique probe selection using Integer Linear Programming.

Klau GW, Rahmann S, Schliep A, Vingron M, Reinert K.

Bioinformatics. 2004 Aug 4;20 Suppl 1:i186-93.

PMID:
15262798
[PubMed - indexed for MEDLINE]
Free Article
18.

Selecting signature oligonucleotides to identify organisms using DNA arrays.

Kaderali L, Schliep A.

Bioinformatics. 2002 Oct;18(10):1340-9.

PMID:
12376378
[PubMed - indexed for MEDLINE]
Free Article
19.

Maskless fabrication of light-directed oligonucleotide microarrays using a digital micromirror array.

Singh-Gasson S, Green RD, Yue Y, Nelson C, Blattner F, Sussman MR, Cerrina F.

Nat Biotechnol. 1999 Oct;17(10):974-8.

PMID:
10504697
[PubMed - indexed for MEDLINE]
20.

Finding large domains of similarly expressed genes. A novel method using the MDL principle and the recursive segmentation procedure.

Nicorici D, Yli-Harja O, Astola J.

IEEE Eng Med Biol Mag. 2006 Jan-Feb;25(1):82-9. No abstract available.

PMID:
16485395
[PubMed - indexed for MEDLINE]

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