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DisProt: a database of protein disorder.

Vucetic S, Obradovic Z, Vacic V, Radivojac P, Peng K, Iakoucheva LM, Cortese MS, Lawson JD, Brown CJ, Sikes JG, Newton CD, Dunker AK.

Bioinformatics. 2005 Jan 1;21(1):137-40. Epub 2004 Aug 13.


DisProt: the Database of Disordered Proteins.

Sickmeier M, Hamilton JA, LeGall T, Vacic V, Cortese MS, Tantos A, Szabo B, Tompa P, Chen J, Uversky VN, Obradovic Z, Dunker AK.

Nucleic Acids Res. 2007 Jan;35(Database issue):D786-93. Epub 2006 Dec 1.


UniProt archive.

Leinonen R, Diez FG, Binns D, Fleischmann W, Lopez R, Apweiler R.

Bioinformatics. 2004 Nov 22;20(17):3236-7. Epub 2004 Mar 25.


The PDB-Preview database: a repository of in-silico models of 'on-hold' PDB entries.

Fischer D, Paś J, Rychlewski L.

Bioinformatics. 2004 Oct 12;20(15):2482-4. Epub 2004 Apr 8.


UniSave: the UniProtKB sequence/annotation version database.

Leinonen R, Nardone F, Zhu W, Apweiler R.

Bioinformatics. 2006 May 15;22(10):1284-5. Epub 2006 Mar 21.


MPSS: an integrated database system for surveying a set of proteins.

Hao P, He WZ, Huang Y, Ma LX, Xu Y, Xi H, Wang C, Liu BS, Wang JM, Li YX, Zhong Y.

Bioinformatics. 2005 May 1;21(9):2142-3. Epub 2005 Feb 4.


PDBML: the representation of archival macromolecular structure data in XML.

Westbrook J, Ito N, Nakamura H, Henrick K, Berman HM.

Bioinformatics. 2005 Apr 1;21(7):988-92. Epub 2004 Oct 27.


GPSDB: a new database for synonyms expansion of gene and protein names.

Pillet V, Zehnder M, Seewald AK, Veuthey AL, Petrak J.

Bioinformatics. 2005 Apr 15;21(8):1743-4. Epub 2004 Dec 21.


ProRule: a new database containing functional and structural information on PROSITE profiles.

Sigrist CJ, De Castro E, Langendijk-Genevaux PS, Le Saux V, Bairoch A, Hulo N.

Bioinformatics. 2005 Nov 1;21(21):4060-6. Epub 2005 Aug 9.


MineBlast: a literature presentation service supporting protein annotation by data mining of BLAST results.

Dieterich G, Kärst U, Wehland J, Jänsch L.

Bioinformatics. 2005 Aug 15;21(16):3450-1. Epub 2005 Jun 7.


AliasServer: a web server to handle multiple aliases used to refer to proteins.

Iragne F, Barré A, Goffard N, De Daruvar A.

Bioinformatics. 2004 Sep 22;20(14):2331-2. Epub 2004 Apr 1.


TargetDB: a target registration database for structural genomics projects.

Chen L, Oughtred R, Berman HM, Westbrook J.

Bioinformatics. 2004 Nov 1;20(16):2860-2. Epub 2004 May 6.


A systematic approach to modeling, capturing, and disseminating proteomics experimental data.

Taylor CF, Paton NW, Garwood KL, Kirby PD, Stead DA, Yin Z, Deutsch EW, Selway L, Walker J, Riba-Garcia I, Mohammed S, Deery MJ, Howard JA, Dunkley T, Aebersold R, Kell DB, Lilley KS, Roepstorff P, Yates JR 3rd, Brass A, Brown AJ, Cash P, Gaskell SJ, Hubbard SJ, Oliver SG.

Nat Biotechnol. 2003 Mar;21(3):247-54.


The binding interface database (BID): a compilation of amino acid hot spots in protein interfaces.

Fischer TB, Arunachalam KV, Bailey D, Mangual V, Bakhru S, Russo R, Huang D, Paczkowski M, Lalchandani V, Ramachandra C, Ellison B, Galer S, Shapley J, Fuentes E, Tsai J.

Bioinformatics. 2003 Jul 22;19(11):1453-4.


Cataloging the relationships between proteins: a review of interaction databases.

Rohl C, Price Y, Fischer TB, Paczkowski M, Zettel MF, Tsai J.

Mol Biotechnol. 2006 Sep;34(1):69-93. Review.


PDTD: a web-accessible protein database for drug target identification.

Gao Z, Li H, Zhang H, Liu X, Kang L, Luo X, Zhu W, Chen K, Wang X, Jiang H.

BMC Bioinformatics. 2008 Feb 19;9:104. doi: 10.1186/1471-2105-9-104.


GeneInfoMiner--a web server for exploring biomedical literature using batch sequence ID.

Xuan W, Watson SJ, Meng F.

Bioinformatics. 2005 Aug 15;21(16):3452-3. Epub 2005 Jun 30.


Nome della Proteina: a protein identification resolution database.

Ng KW, Garner HR.

IEEE Eng Med Biol Mag. 2007 Jul-Aug;26(4):70-2. No abstract available.


ProtBuD: a database of biological unit structures of protein families and superfamilies.

Xu Q, Canutescu A, Obradovic Z, Dunbrack RL Jr.

Bioinformatics. 2006 Dec 1;22(23):2876-82. Epub 2006 Oct 2. Erratum in: Bioinformatics. 2007 Aug;23(15):2028.


eF-site and PDBjViewer: database and viewer for protein functional sites.

Kinoshita K, Nakamura H.

Bioinformatics. 2004 May 22;20(8):1329-30. Epub 2004 Feb 10.

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