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Results: 1 to 20 of 154

1.

The SHS2 module is a common structural theme in functionally diverse protein groups, like Rpb7p, FtsA, GyrI, and MTH1598/TM1083 superfamilies.

Anantharaman V, Aravind L.

Proteins. 2004 Sep 1;56(4):795-807.

PMID:
15281131
[PubMed - indexed for MEDLINE]
2.

A novel family of P-loop NTPases with an unusual phyletic distribution and transmembrane segments inserted within the NTPase domain.

Aravind L, Iyer LM, Leipe DD, Koonin EV.

Genome Biol. 2004;5(5):R30. Epub 2004 Apr 16.

PMID:
15128444
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

The emergence of catalytic and structural diversity within the beta-clip fold.

Iyer LM, Aravind L.

Proteins. 2004 Jun 1;55(4):977-91.

PMID:
15146494
[PubMed - indexed for MEDLINE]
4.
5.

Evolutionary genomics of the HAD superfamily: understanding the structural adaptations and catalytic diversity in a superfamily of phosphoesterases and allied enzymes.

Burroughs AM, Allen KN, Dunaway-Mariano D, Aravind L.

J Mol Biol. 2006 Sep 1;361(5):1003-34. Epub 2006 Jul 7.

PMID:
16889794
[PubMed - indexed for MEDLINE]
6.

The PRC-barrel: a widespread, conserved domain shared by photosynthetic reaction center subunits and proteins of RNA metabolism.

Anantharaman V, Aravind L.

Genome Biol. 2002 Oct 14;3(11):RESEARCH0061. Epub 2002 Oct 14.

PMID:
12429060
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

The SWIRM domain: a conserved module found in chromosomal proteins points to novel chromatin-modifying activities.

Aravind L, Iyer LM.

Genome Biol. 2002 Jul 24;3(8):RESEARCH0039. Epub 2002 Jul 24.

PMID:
12186646
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

The NYN domains: novel predicted RNAses with a PIN domain-like fold.

Anantharaman V, Aravind L.

RNA Biol. 2006 Jan-Mar;3(1):18-27. Epub 2006 Jan 23.

PMID:
17114934
[PubMed - indexed for MEDLINE]
Free Article
10.

Interaction interfaces of protein domains are not topologically equivalent across families within superfamilies: Implications for metabolic and signaling pathways.

Rekha N, Machado SM, Narayanan C, Krupa A, Srinivasan N.

Proteins. 2005 Feb 1;58(2):339-53.

PMID:
15562516
[PubMed - indexed for MEDLINE]
11.

On the origin of the histone fold.

Alva V, Ammelburg M, Söding J, Lupas AN.

BMC Struct Biol. 2007 Mar 28;7:17.

PMID:
17391511
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

The PAM domain, a multi-protein complex-associated module with an all-alpha-helix fold.

Ciccarelli FD, Izaurralde E, Bork P.

BMC Bioinformatics. 2003 Dec 19;4:64.

PMID:
14687415
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Novel conserved domains in proteins with predicted roles in eukaryotic cell-cycle regulation, decapping and RNA stability.

Anantharaman V, Aravind L.

BMC Genomics. 2004 Jul 16;5(1):45.

PMID:
15257761
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Structure of an archaeal homolog of the eukaryotic RNA polymerase II RPB4/RPB7 complex.

Todone F, Brick P, Werner F, Weinzierl RO, Onesti S.

Mol Cell. 2001 Nov;8(5):1137-43.

PMID:
11741548
[PubMed - indexed for MEDLINE]
Free Article
15.

Identification of novel restriction endonuclease-like fold families among hypothetical proteins.

Kinch LN, Ginalski K, Rychlewski L, Grishin NV.

Nucleic Acids Res. 2005 Jun 22;33(11):3598-605. Print 2005.

PMID:
15972856
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

New connections in the prokaryotic toxin-antitoxin network: relationship with the eukaryotic nonsense-mediated RNA decay system.

Anantharaman V, Aravind L.

Genome Biol. 2003;4(12):R81. Epub 2003 Nov 26.

PMID:
14659018
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

The PAS fold. A redefinition of the PAS domain based upon structural prediction.

Hefti MH, Françoijs KJ, de Vries SC, Dixon R, Vervoort J.

Eur J Biochem. 2004 Mar;271(6):1198-208.

PMID:
15009198
[PubMed - indexed for MEDLINE]
18.

Longin-like folds identified in CHiPS and DUF254 proteins: vesicle trafficking complexes conserved in eukaryotic evolution.

Kinch LN, Grishin NV.

Protein Sci. 2006 Nov;15(11):2669-74.

PMID:
17075139
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Provenance of SET-domain histone methyltransferases through duplication of a simple structural unit.

Aravind L, Iyer LM.

Cell Cycle. 2003 Jul-Aug;2(4):369-76.

PMID:
12851491
[PubMed - indexed for MEDLINE]
Free Article
20.

Novel predicted peptidases with a potential role in the ubiquitin signaling pathway.

Iyer LM, Koonin EV, Aravind L.

Cell Cycle. 2004 Nov;3(11):1440-50. Epub 2004 Nov 6.

PMID:
15483401
[PubMed - indexed for MEDLINE]
Free Article

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