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Results: 1 to 20 of 103

1.

KCaM (KEGG Carbohydrate Matcher): a software tool for analyzing the structures of carbohydrate sugar chains.

Aoki KF, Yamaguchi A, Ueda N, Akutsu T, Mamitsuka H, Goto S, Kanehisa M.

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W267-72.

PMID:
15215393
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Efficient tree-matching methods for accurate carbohydrate database queries.

Aoki KF, Yamaguchi A, Okuno Y, Akutsu T, Ueda N, Kanehisa M, Mamitsuka H.

Genome Inform. 2003;14:134-43.

PMID:
15706528
[PubMed - indexed for MEDLINE]
3.

KEGG as a glycome informatics resource.

Hashimoto K, Goto S, Kawano S, Aoki-Kinoshita KF, Ueda N, Hamajima M, Kawasaki T, Kanehisa M.

Glycobiology. 2006 May;16(5):63R-70R. Epub 2005 Jul 13. Review.

PMID:
16014746
[PubMed - indexed for MEDLINE]
Free Article
4.

A score matrix to reveal the hidden links in glycans.

Aoki KF, Mamitsuka H, Akutsu T, Kanehisa M.

Bioinformatics. 2005 Apr 15;21(8):1457-63. Epub 2004 Dec 7.

PMID:
15585530
[PubMed - indexed for MEDLINE]
Free Article
5.

GlycoWorkbench: a tool for the computer-assisted annotation of mass spectra of glycans.

Ceroni A, Maass K, Geyer H, Geyer R, Dell A, Haslam SM.

J Proteome Res. 2008 Apr;7(4):1650-9. doi: 10.1021/pr7008252. Epub 2008 Mar 1.

PMID:
18311910
[PubMed - indexed for MEDLINE]
6.

Glycoconjugate Data Bank: Structures--an annotated glycan structure database and N-glycan primary structure verification service.

Nakahara T, Hashimoto R, Nakagawa H, Monde K, Miura N, Nishimura S.

Nucleic Acids Res. 2008 Jan;36(Database issue):D368-71. Epub 2007 Oct 11.

PMID:
17933765
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

A global representation of the carbohydrate structures: a tool for the analysis of glycan.

Hashimoto K, Kawano S, Goto S, Aoki-Kinoshita KF, Kawashima M, Kanehisa M.

Genome Inform. 2005;16(1):214-22.

PMID:
16362924
[PubMed - indexed for MEDLINE]
8.

ProfilePSTMM: capturing tree-structure motifs in carbohydrate sugar chains.

Aoki-Kinoshita KF, Ueda N, Mamitsuka H, Kanehisa M.

Bioinformatics. 2006 Jul 15;22(14):e25-34.

PMID:
16873479
[PubMed - indexed for MEDLINE]
Free Article
9.

BOV--a web-based BLAST output visualization tool.

Gollapudi R, Revanna KV, Hemmerich C, Schaack S, Dong Q.

BMC Genomics. 2008 Sep 15;9:414. doi: 10.1186/1471-2164-9-414.

PMID:
18793422
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Glycan classification with tree kernels.

Yamanishi Y, Bach F, Vert JP.

Bioinformatics. 2007 May 15;23(10):1211-6. Epub 2007 Mar 7.

PMID:
17344232
[PubMed - indexed for MEDLINE]
Free Article
11.

Application of a new probabilistic model for recognizing complex patterns in glycans.

Aoki KF, Ueda N, Yamaguchi A, Kanehisa M, Akutsu T, Mamitsuka H.

Bioinformatics. 2004 Aug 4;20 Suppl 1:i6-14.

PMID:
15262775
[PubMed - indexed for MEDLINE]
Free Article
12.

Mining frequent subtrees in glycan data using the RINGS glycan miner tool.

Aoki-Kinoshita KF.

Methods Mol Biol. 2013;939:87-95. doi: 10.1007/978-1-62703-107-3_8.

PMID:
23192543
[PubMed - indexed for MEDLINE]
13.

PSAT: a web tool to compare genomic neighborhoods of multiple prokaryotic genomes.

Fong C, Rohmer L, Radey M, Wasnick M, Brittnacher MJ.

BMC Bioinformatics. 2008 Mar 26;9:170. doi: 10.1186/1471-2105-9-170.

PMID:
18366802
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Glycan fragment database: a database of PDB-based glycan 3D structures.

Jo S, Im W.

Nucleic Acids Res. 2013 Jan;41(Database issue):D470-4. doi: 10.1093/nar/gks987. Epub 2012 Oct 26.

PMID:
23104379
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

A weighted q-gram method for glycan structure classification.

Li L, Ching WK, Yamaguchi T, Aoki-Kinoshita KF.

BMC Bioinformatics. 2010 Jan 18;11 Suppl 1:S33. doi: 10.1186/1471-2105-11-S1-S33.

PMID:
20122206
[PubMed - indexed for MEDLINE]
Free PMC Article
16.
17.

Automated motif discovery from glycan array data.

Cholleti SR, Agravat S, Morris T, Saltz JH, Song X, Cummings RD, Smith DF.

OMICS. 2012 Oct;16(10):497-512. Epub 2012 Aug 9.

PMID:
22877213
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

GlycoViewer: a tool for visual summary and comparative analysis of the glycome.

Joshi HJ, von der Lieth CW, Packer NH, Wilkins MR.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W667-70. doi: 10.1093/nar/gkq446. Epub 2010 May 25.

PMID:
20501599
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

GeneTools--application for functional annotation and statistical hypothesis testing.

Beisvag V, Jünge FK, Bergum H, Jølsum L, Lydersen S, Günther CC, Ramampiaro H, Langaas M, Sandvik AK, Laegreid A.

BMC Bioinformatics. 2006 Oct 24;7:470.

PMID:
17062145
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

The RINGS resource for glycome informatics analysis and data mining on the Web.

Akune Y, Hosoda M, Kaiya S, Shinmachi D, Aoki-Kinoshita KF.

OMICS. 2010 Aug;14(4):475-86. doi: 10.1089/omi.2009.0129.

PMID:
20726803
[PubMed - indexed for MEDLINE]

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