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Results: 1 to 20 of 76

1.

Evolutionary rate depends on number of protein-protein interactions independently of gene expression level.

Fraser HB, Hirsh AE.

BMC Evol Biol. 2004 May 27;4:13.

PMID:
15165289
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Protein protein interactions, evolutionary rate, abundance and age.

Saeed R, Deane CM.

BMC Bioinformatics. 2006 Mar 13;7:128.

PMID:
16533385
[PubMed - indexed for MEDLINE]
Free PMC Article
3.
4.
5.

Multifunctionality dominantly determines the rate of human housekeeping and tissue specific interacting protein evolution.

Podder S, Mukhopadhyay P, Ghosh TC.

Gene. 2009 Jun 15;439(1-2):11-6. doi: 10.1016/j.gene.2009.03.005. Epub 2009 Mar 20.

PMID:
19306918
[PubMed - indexed for MEDLINE]
6.

Comparative analysis of the Saccharomyces cerevisiae and Caenorhabditis elegans protein interaction networks.

Agrafioti I, Swire J, Abbott J, Huntley D, Butcher S, Stumpf MP.

BMC Evol Biol. 2005 Mar 18;5:23.

PMID:
15777474
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Categorizing biases in high-confidence high-throughput protein-protein interaction data sets.

Yu X, Ivanic J, Memisević V, Wallqvist A, Reifman J.

Mol Cell Proteomics. 2011 Dec;10(12):M111.012500. doi: 10.1074/mcp.M111.012500. Epub 2011 Aug 29.

PMID:
21876202
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Evolutionary rate depends on number of protein-protein interactions independently of gene expression level: response.

Bloom JD, Adami C.

BMC Evol Biol. 2004 Jun 1;4:14. No abstract available.

PMID:
15171796
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Understanding protein evolutionary rate by integrating gene co-expression with protein interactions.

Pang K, Cheng C, Xuan Z, Sheng H, Ma X.

BMC Syst Biol. 2010 Dec 30;4:179. doi: 10.1186/1752-0509-4-179.

PMID:
21190591
[PubMed - indexed for MEDLINE]
Free PMC Article
10.
11.

Comparable contributions of structural-functional constraints and expression level to the rate of protein sequence evolution.

Wolf MY, Wolf YI, Koonin EV.

Biol Direct. 2008 Oct 7;3:40. doi: 10.1186/1745-6150-3-40.

PMID:
18840284
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Three independent determinants of protein evolutionary rate.

Choi SS, Hannenhalli S.

J Mol Evol. 2013 Mar;76(3):98-111. doi: 10.1007/s00239-013-9543-6. Epub 2013 Feb 12. Review.

PMID:
23400388
[PubMed - indexed for MEDLINE]
13.

Structure and evolution of protein interaction networks: a statistical model for link dynamics and gene duplications.

Berg J, Lässig M, Wagner A.

BMC Evol Biol. 2004 Nov 27;4:51.

PMID:
15566577
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Functional genomic analysis of the rates of protein evolution.

Wall DP, Hirsh AE, Fraser HB, Kumm J, Giaever G, Eisen MB, Feldman MW.

Proc Natl Acad Sci U S A. 2005 Apr 12;102(15):5483-8. Epub 2005 Mar 30. Erratum in: Proc Natl Acad Sci U S A. 2006 May 16;103(20):7935.

PMID:
15800036
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Principles of protein-protein interactions.

Teichmann SA.

Bioinformatics. 2002;18 Suppl 2:S249.

PMID:
12386009
[PubMed - indexed for MEDLINE]
Free Article
16.

Evolutionary analysis reveals low coverage as the major challenge for protein interaction network alignment.

Ali W, Deane CM.

Mol Biosyst. 2010 Nov;6(11):2296-304. doi: 10.1039/c004430j. Epub 2010 Aug 26.

PMID:
20740252
[PubMed - indexed for MEDLINE]
17.

Evolution of proteins and gene expression levels are coupled in Drosophila and are independently associated with mRNA abundance, protein length, and number of protein-protein interactions.

Lemos B, Bettencourt BR, Meiklejohn CD, Hartl DL.

Mol Biol Evol. 2005 May;22(5):1345-54. Epub 2005 Mar 2.

PMID:
15746013
[PubMed - indexed for MEDLINE]
Free Article
18.

Understanding protein dispensability through machine-learning analysis of high-throughput data.

Chen Y, Xu D.

Bioinformatics. 2005 Mar 1;21(5):575-81. Epub 2004 Oct 12.

PMID:
15479713
[PubMed - indexed for MEDLINE]
Free Article
19.

Significant impact of protein dispensability on the instantaneous rate of protein evolution.

Zhang J, He X.

Mol Biol Evol. 2005 Apr;22(4):1147-55. Epub 2005 Feb 2.

PMID:
15689524
[PubMed - indexed for MEDLINE]
Free Article
20.

Protein stickiness, rather than number of functional protein-protein interactions, predicts expression noise and plasticity in yeast.

Brettner LM, Masel J.

BMC Syst Biol. 2012 Sep 27;6:128. doi: 10.1186/1752-0509-6-128.

PMID:
23017156
[PubMed - indexed for MEDLINE]
Free PMC Article

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