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Similar articles for PubMed (Select 15042091)

1.

A resource for large-scale RNA-interference-based screens in mammals.

Paddison PJ, Silva JM, Conklin DS, Schlabach M, Li M, Aruleba S, Balija V, O'Shaughnessy A, Gnoj L, Scobie K, Chang K, Westbrook T, Cleary M, Sachidanandam R, McCombie WR, Elledge SJ, Hannon GJ.

Nature. 2004 Mar 25;428(6981):427-31.

PMID:
15042091
2.

Next-generation libraries for robust RNA interference-based genome-wide screens.

Kampmann M, Horlbeck MA, Chen Y, Tsai JC, Bassik MC, Gilbert LA, Villalta JE, Kwon SC, Chang H, Kim VN, Weissman JS.

Proc Natl Acad Sci U S A. 2015 Jun 30;112(26):E3384-91. doi: 10.1073/pnas.1508821112. Epub 2015 Jun 15.

PMID:
26080438
3.

The Power Decoder Simulator for the Evaluation of Pooled shRNA Screen Performance.

Stombaugh J, Licon A, Strezoska Ž, Stahl J, Anderson SB, Banos M, van Brabant Smith A, Birmingham A, Vermeulen A.

J Biomol Screen. 2015 Mar 16. pii: 1087057115576715. [Epub ahead of print]

PMID:
25777298
4.

In vivo shRNA screens in solid tumors.

Gargiulo G, Serresi M, Cesaroni M, Hulsman D, van Lohuizen M.

Nat Protoc. 2014 Dec;9(12):2880-902. doi: 10.1038/nprot.2014.185. Epub 2014 Nov 20.

PMID:
25411954
5.

One long oligonucleotide or two short oligonucleotides based shRNA construction and expression.

Wang XJ, Wang SQ.

Methods Mol Biol. 2015;1218:37-41. doi: 10.1007/978-1-4939-1538-5_3.

PMID:
25319644
6.

Flow cytometry-based functional selection of RNA interference triggers for efficient epi-allelic analysis of therapeutic targets.

Micklem DR, Blø M, Bergström P, Hodneland E, Tiron C, Høiby T, Gjerdrum C, Hammarsten O, Lorens JB.

BMC Biotechnol. 2014 Jun 21;14:57. doi: 10.1186/1472-6750-14-57.

7.

Online GESS: prediction of miRNA-like off-target effects in large-scale RNAi screen data by seed region analysis.

Yilmazel B, Hu Y, Sigoillot F, Smith JA, Shamu CE, Perrimon N, Mohr SE.

BMC Bioinformatics. 2014 Jun 17;15:192. doi: 10.1186/1471-2105-15-192.

8.

edgeR: a versatile tool for the analysis of shRNA-seq and CRISPR-Cas9 genetic screens.

Dai Z, Sheridan JM, Gearing LJ, Moore DL, Su S, Wormald S, Wilcox S, O'Connor L, Dickins RA, Blewitt ME, Ritchie ME.

Version 2. F1000Res. 2014 Apr 24 [revised 2014 Oct 21];3:95. doi: 10.12688/f1000research.3928.2. eCollection 2014.

9.

Introduction of mismatches in a random shRNA-encoding library improves potency for phenotypic selection.

Wang Y, Speier JS, Engram-Pearl J, Wilson RB.

PLoS One. 2014 Feb 3;9(2):e87390. doi: 10.1371/journal.pone.0087390. eCollection 2014.

10.
11.

Stable RNA interference rules for silencing.

Fellmann C, Lowe SW.

Nat Cell Biol. 2014 Jan;16(1):10-8. doi: 10.1038/ncb2895. Review.

12.

Integrated platform for genome-wide screening and construction of high-density genetic interaction maps in mammalian cells.

Kampmann M, Bassik MC, Weissman JS.

Proc Natl Acad Sci U S A. 2013 Jun 18;110(25):E2317-26. doi: 10.1073/pnas.1307002110. Epub 2013 Jun 5.

13.

Organic small hairpin RNAs (OshR): a do-it-yourself platform for transgene-based gene silencing.

Zeng M, Kuzirian MS, Harper L, Paradis S, Nakayama T, Lau NC.

Methods. 2013 Sep 15;63(2):101-9. doi: 10.1016/j.ymeth.2013.05.007. Epub 2013 May 23.

14.

Analysis of human protein replacement stable cell lines established using snoMEN-PR vector.

Ono M, Yamada K, Endo A, Avolio F, Lamond AI.

PLoS One. 2013 Apr 25;8(4):e62305. doi: 10.1371/journal.pone.0062305. Print 2013.

15.

Determination of the role of DDX3 a factor involved in mammalian RNAi pathway using an shRNA-expression library.

Kasim V, Wu S, Taira K, Miyagishi M.

PLoS One. 2013;8(3):e59445. doi: 10.1371/journal.pone.0059445. Epub 2013 Mar 19.

16.

In vivo target validation by inducible RNAi in human xenograft mouse models.

Mazzoletti M, Texidó G.

Methods Mol Biol. 2013;986:325-37. doi: 10.1007/978-1-62703-311-4_20.

PMID:
23436421
17.

Target validation in mice by constitutive and conditional RNAi.

Kleinhammer A, Wurst W, Kühn R.

Methods Mol Biol. 2013;986:307-23. doi: 10.1007/978-1-62703-311-4_19.

PMID:
23436420
18.

[RNA interference library research progress and its application in cancer research].

Zhao N, Cai L.

Zhongguo Fei Ai Za Zhi. 2013 Feb;16(2):102-6. doi: 10.3779/j.issn.1009-3419.2013.02.08. Review. Chinese.

19.

A simple and robust vector-based shRNA expression system used for RNA interference.

Wang XJ, Li Y, Huang H, Zhang XJ, Xie PW, Hu W, Li DD, Wang SQ.

PLoS One. 2013;8(2):e56110. doi: 10.1371/journal.pone.0056110. Epub 2013 Feb 6.

20.

Pooled shRNA screenings: experimental approach.

Rodriguez-Barrueco R, Marshall N, Silva JM.

Methods Mol Biol. 2013;980:353-70. doi: 10.1007/978-1-62703-287-2_21.

PMID:
23359166
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