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Items: 1 to 20 of 119

1.

Decreasing the effects of horizontal gene transfer on bacterial phylogeny: the Escherichia coli case study.

Escobar-Páramo P, Sabbagh A, Darlu P, Pradillon O, Vaury C, Denamur E, Lecointre G.

Mol Phylogenet Evol. 2004 Jan;30(1):243-50.

PMID:
15022774
2.

Escherichia coli molecular phylogeny using the incongruence length difference test.

Lecointre G, Rachdi L, Darlu P, Denamur E.

Mol Biol Evol. 1998 Dec;15(12):1685-95.

3.

Phylogenetic evidence for horizontal transfer of mutS alleles among naturally occurring Escherichia coli strains.

Brown EW, LeClerc JE, Li B, Payne WL, Cebula TA.

J Bacteriol. 2001 Mar;183(5):1631-44.

4.
5.

Detection of recombination among Salmonella enterica strains using the incongruence length difference test.

Brown EW, Kotewicz ML, Cebula TA.

Mol Phylogenet Evol. 2002 Jul;24(1):102-20.

PMID:
12128032
6.

Microbial source tracking by DNA sequence analysis of the Escherichia coli malate dehydrogenase gene.

Ivanetich KM, Hsu PH, Wunderlich KM, Messenger E, Walkup WG 4th, Scott TM, Lukasik J, Davis J.

J Microbiol Methods. 2006 Dec;67(3):507-26. Epub 2006 Sep 14.

PMID:
16973226
7.

Extensive horizontal transfer of core genome genes between two Lactobacillus species found in the gastrointestinal tract.

Nicolas P, Bessières P, Ehrlich SD, Maguin E, van de Guchte M.

BMC Evol Biol. 2007 Aug 20;7:141.

8.

Role of intraspecies recombination in the spread of pathogenicity islands within the Escherichia coli species.

Schubert S, Darlu P, Clermont O, Wieser A, Magistro G, Hoffmann C, Weinert K, Tenaillon O, Matic I, Denamur E.

PLoS Pathog. 2009 Jan;5(1):e1000257. doi: 10.1371/journal.ppat.1000257. Epub 2009 Jan 9.

9.

Estimating the extent of horizontal gene transfer in metagenomic sequences.

Tamames J, Moya A.

BMC Genomics. 2008 Mar 24;9:136. doi: 10.1186/1471-2164-9-136.

10.

Toward a more robust assessment of intraspecies diversity, using fewer genetic markers.

Konstantinidis KT, Ramette A, Tiedje JM.

Appl Environ Microbiol. 2006 Nov;72(11):7286-93. Epub 2006 Sep 15.

11.

Genomic divergence of Escherichia coli strains: evidence for horizontal transfer and variation in mutation rates.

Elena SF, Whittam TS, Winkworth CL, Riley MA, Lenski RE.

Int Microbiol. 2005 Dec;8(4):271-8.

12.

Detecting phylogenetic incongruence using BIONJ: an improvement of the ILD test.

Zelwer M, Daubin V.

Mol Phylogenet Evol. 2004 Dec;33(3):687-93.

PMID:
15522796
13.

Population genetics of Escherichia coli in a natural population of native Australian rats.

Pupo GM, Lan R, Reeves PR, Baverstock PR.

Environ Microbiol. 2000 Dec;2(6):594-610.

PMID:
11214793
14.

Phylogenetic relationships among clonal groups of extraintestinal pathogenic Escherichia coli as assessed by multi-locus sequence analysis.

Johnson JR, Owens KL, Clabots CR, Weissman SJ, Cannon SB.

Microbes Infect. 2006 Jun;8(7):1702-13. Epub 2006 Apr 21.

PMID:
16820314
15.

Extraintestinal virulence is a coincidental by-product of commensalism in B2 phylogenetic group Escherichia coli strains.

Le Gall T, Clermont O, Gouriou S, Picard B, Nassif X, Denamur E, Tenaillon O.

Mol Biol Evol. 2007 Nov;24(11):2373-84. Epub 2007 Aug 19.

16.

Escherichia coli molecular genetic map (1500 kbp): update II.

Médigue C, Viari A, Hénaut A, Danchin A.

Mol Microbiol. 1991 Nov;5(11):2629-40.

PMID:
1779754
17.

Archaeology and evolution of transfer RNA genes in the Escherichia coli genome.

Withers M, Wernisch L, dos Reis M.

RNA. 2006 Jun;12(6):933-42. Epub 2006 Apr 17.

18.

The microsatellites of Escherichia coli: rapidly evolving repetitive DNAs in a non-pathogenic prokaryote.

Metzgar D, Thomas E, Davis C, Field D, Wills C.

Mol Microbiol. 2001 Jan;39(1):183-90.

PMID:
11123700
19.
20.

Noise and incongruence: interpreting results of the incongruence length difference test.

Dolphin K, Belshaw R, Orme CD, Quicke DL.

Mol Phylogenet Evol. 2000 Dec;17(3):401-6.

PMID:
11133194
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