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Results: 1 to 20 of 174

Similar articles for PubMed (Select 14976031)

1.

GeneSyn: a tool for detecting conserved gene order across genomes.

Pavesi G, Mauri G, Iannelli F, Gissi C, Pesole G.

Bioinformatics. 2004 Jun 12;20(9):1472-4. Epub 2004 Feb 19.

2.

EC_oligos: automated and whole-genome primer design for exons within one or between two genomes.

Liu S, Tinker NA, Molnar SJ, Mather DE.

Bioinformatics. 2004 Dec 12;20(18):3668-9. Epub 2004 Jul 22.

3.

i-ADHoRe 2.0: an improved tool to detect degenerated genomic homology using genomic profiles.

Simillion C, Janssens K, Sterck L, Van de Peer Y.

Bioinformatics. 2008 Jan 1;24(1):127-8. Epub 2007 Oct 17.

4.

WindowMasker: window-based masker for sequenced genomes.

Morgulis A, Gertz EM, Schäffer AA, Agarwala R.

Bioinformatics. 2006 Jan 15;22(2):134-41. Epub 2005 Nov 15.

5.

OMA Browser--exploring orthologous relations across 352 complete genomes.

Schneider A, Dessimoz C, Gonnet GH.

Bioinformatics. 2007 Aug 15;23(16):2180-2. Epub 2007 Jun 1.

6.

Efficient multiple genome alignment.

Höhl M, Kurtz S, Ohlebusch E.

Bioinformatics. 2002;18 Suppl 1:S312-20.

7.

COMPAM :visualization of combining pairwise alignments for multiple genomes.

Lee D, Choi JH, Dalkilic MM, Kim S.

Bioinformatics. 2006 Jan 15;22(2):242-4. Epub 2005 Nov 3.

8.

PSAT: a web tool to compare genomic neighborhoods of multiple prokaryotic genomes.

Fong C, Rohmer L, Radey M, Wasnick M, Brittnacher MJ.

BMC Bioinformatics. 2008 Mar 26;9:170. doi: 10.1186/1471-2105-9-170.

9.

DAGchainer: a tool for mining segmental genome duplications and synteny.

Haas BJ, Delcher AL, Wortman JR, Salzberg SL.

Bioinformatics. 2004 Dec 12;20(18):3643-6. Epub 2004 Jul 9.

10.

OWEN: aligning long collinear regions of genomes.

Ogurtsov AY, Roytberg MA, Shabalina SA, Kondrashov AS.

Bioinformatics. 2002 Dec;18(12):1703-4.

11.

GenoMiner: a tool for genome-wide search of coding and non-coding conserved sequence tags.

Castrignanò T, De Meo PD, Grillo G, Liuni S, Mignone F, Talamo IG, Pesole G.

Bioinformatics. 2006 Feb 15;22(4):497-9. Epub 2005 Nov 2.

12.

GARD: a genetic algorithm for recombination detection.

Kosakovsky Pond SL, Posada D, Gravenor MB, Woelk CH, Frost SD.

Bioinformatics. 2006 Dec 15;22(24):3096-8. Epub 2006 Nov 16.

13.

Phylogenetic exploration of bacterial genomic rearrangements.

Fremez R, Faraut T, Fichant G, Gouzy J, Quentin Y.

Bioinformatics. 2007 May 1;23(9):1172-4. Epub 2007 Mar 1.

14.

GenAlyzer: interactive visualization of sequence similarities between entire genomes.

Choudhuri JV, Schleiermacher C, Kurtz S, Giegerich R.

Bioinformatics. 2004 Aug 12;20(12):1964-5. Epub 2004 Feb 26.

15.

Comparative annotation of viral genomes with non-conserved gene structure.

de Groot S, Mailund T, Hein J.

Bioinformatics. 2007 May 1;23(9):1080-9. Epub 2007 Mar 6.

16.

Efficient algorithms and software for detection of full-length LTR retrotransposons.

Kalyanaraman A, Aluru S.

Proc IEEE Comput Syst Bioinform Conf. 2005:56-64.

PMID:
16447962
17.

Detecting horizontal gene transfer with T-REX and RHOM programs.

Li Z, Wang L, Zhong Y.

Brief Bioinform. 2005 Dec;6(4):394-401.

18.

AIMIE: a web-based environment for detection and interpretation of significant sequence motifs in prokaryotic genomes.

Mrázek J, Xie S, Guo X, Srivastava A.

Bioinformatics. 2008 Apr 15;24(8):1041-8. doi: 10.1093/bioinformatics/btn077. Epub 2008 Feb 26.

19.

Deltarho-web, an online tool to assess composition similarity of individual nucleic acid sequences.

van Passel MW, Luyf AC, van Kampen AH, Bart A, van der Ende A.

Bioinformatics. 2005 Jul 1;21(13):3053-5. Epub 2005 Apr 26.

20.

Homology assessment and molecular sequence alignment.

Phillips AJ.

J Biomed Inform. 2006 Feb;39(1):18-33. Epub 2005 Dec 9. Review.

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