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Results: 1 to 20 of 72

1.

Statistical analysis of over-represented words in human promoter sequences.

Mariño-Ramírez L, Spouge JL, Kanga GC, Landsman D.

Nucleic Acids Res. 2004 Feb 12;32(3):949-58. Print 2004. Erratum in: Nucleic Acids Res. 2004 Nov 8;32(19):5972. Nucleic Acids Res. 2004 Dec;32(22):6718.

PMID:
14963262
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

The biological function of some human transcription factor binding motifs varies with position relative to the transcription start site.

Tharakaraman K, Bodenreider O, Landsman D, Spouge JL, Mariño-Ramírez L.

Nucleic Acids Res. 2008 May;36(8):2777-86. doi: 10.1093/nar/gkn137. Epub 2008 Mar 26.

PMID:
18367472
[PubMed - indexed for MEDLINE]
Free PMC Article
3.
4.

Genome-wide identification of transcription start sites, promoters and transcription factor binding sites in E. coli.

Mendoza-Vargas A, Olvera L, Olvera M, Grande R, Vega-Alvarado L, Taboada B, Jimenez-Jacinto V, Salgado H, Juárez K, Contreras-Moreira B, Huerta AM, Collado-Vides J, Morett E.

PLoS One. 2009 Oct 19;4(10):e7526. doi: 10.1371/journal.pone.0007526.

PMID:
19838305
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Large-scale collection and characterization of promoters of human and mouse genes.

Suzuki Y, Yamashita R, Shirota M, Sakakibara Y, Chiba J, Mizushima-Sugano J, Kel AE, Arakawa T, Carninci P, Kawai J, Hayashizaki Y, Takagi T, Nakai K, Sugano S.

In Silico Biol. 2004;4(4):429-44.

PMID:
15506993
[PubMed - indexed for MEDLINE]
6.

Characterization of the human p11 promoter sequence.

Huang X, Pawliczak R, Yao XL, Madara P, Alsaaty S, Shelhamer JH, Cowan MJ.

Gene. 2003 May 22;310:133-42.

PMID:
12801640
[PubMed - indexed for MEDLINE]
7.

Motif composition, conservation and condition-specificity of single and alternative transcription start sites in the Drosophila genome.

Rach EA, Yuan HY, Majoros WH, Tomancak P, Ohler U.

Genome Biol. 2009;10(7):R73. doi: 10.1186/gb-2009-10-7-r73. Epub 2009 Jul 9.

PMID:
19589141
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Conserved short sequences in promoter regions of human genome.

Putta P, Mitra CK.

J Biomol Struct Dyn. 2010 Apr;27(5):599-610.

PMID:
20085377
[PubMed - indexed for MEDLINE]
9.

The human glucocorticoid receptor promoter upstream sequences contain binding sites for the ubiquitous transcription factor, Yin Yang 1.

Breslin MB, Vedeckis WV.

J Steroid Biochem Mol Biol. 1998 Dec;67(5-6):369-81.

PMID:
10030686
[PubMed - indexed for MEDLINE]
10.

Composition-sensitive analysis of the human genome for regulatory signals.

Kel-Margoulis OV, Tchekmenev D, Kel AE, Goessling E, Hornischer K, Lewicki-Potapov B, Wingender E.

In Silico Biol. 2003;3(1-2):145-71. Epub 2003 Jun 27.

PMID:
12954097
[PubMed - indexed for MEDLINE]
11.

Gene structure and organization of the human beta-secretase (BACE) promoter.

Sambamurti K, Kinsey R, Maloney B, Ge YW, Lahiri DK.

FASEB J. 2004 Jun;18(9):1034-6. Epub 2004 Apr 1.

PMID:
15059975
[PubMed - indexed for MEDLINE]
Free Article
12.

Characterization of transcriptional regulatory elements in the promoter region of the murine blood coagulation factor VII gene.

Stauffer DR, Chukwumezie BN, Wilberding JA, Rosen ED, Castellino FJ.

J Biol Chem. 1998 Jan 23;273(4):2277-87.

PMID:
9442072
[PubMed - indexed for MEDLINE]
Free Article
13.

Identification of highly specific localized sequence motifs in human ribosomal protein gene promoters.

Roepcke S, Zhi D, Vingron M, Arndt PF.

Gene. 2006 Jan 3;365:48-56. Epub 2005 Dec 15.

PMID:
16343812
[PubMed - indexed for MEDLINE]
14.

Characterization of transcription from TATA-less promoters: identification of a new core promoter element XCPE2 and analysis of factor requirements.

Anish R, Hossain MB, Jacobson RH, Takada S.

PLoS One. 2009;4(4):e5103. doi: 10.1371/journal.pone.0005103. Epub 2009 Apr 1.

PMID:
19337366
[PubMed - indexed for MEDLINE]
Free PMC Article
15.
16.

Identification and characterization of the potential promoter regions of 1031 kinds of human genes.

Suzuki Y, Tsunoda T, Sese J, Taira H, Mizushima-Sugano J, Hata H, Ota T, Isogai T, Tanaka T, Nakamura Y, Suyama A, Sakaki Y, Morishita S, Okubo K, Sugano S.

Genome Res. 2001 May;11(5):677-84.

PMID:
11337467
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Characterization of the 5'-regulatory region of the human thiamin transporter SLC19A3: in vitro and in vivo studies.

Nabokina SM, Said HM.

Am J Physiol Gastrointest Liver Physiol. 2004 Oct;287(4):G822-9. Epub 2004 Jun 24.

PMID:
15217784
[PubMed - indexed for MEDLINE]
Free Article
18.

Characterization of the regulatory regions in the human desmoglein genes encoding the pemphigus foliaceous and pemphigus vulgaris antigens.

Adams MJ, Reichel MB, King IA, Marsden MD, Greenwood MD, Thirlwell H, Arnemann J, Buxton RS, Ali RR.

Biochem J. 1998 Jan 1;329 ( Pt 1):165-74.

PMID:
9405290
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Identification of two new cytochrome P450 genes and their 5'-flanking regions from the housefly, Musca domestica.

Liu N, Zhang L.

Insect Biochem Mol Biol. 2002 Jul;32(7):755-64.

PMID:
12044492
[PubMed - indexed for MEDLINE]
20.

Identification of estrogen-responsive genes using a genome-wide analysis of promoter elements for transcription factor binding sites.

Kamalakaran S, Radhakrishnan SK, Beck WT.

J Biol Chem. 2005 Jun 3;280(22):21491-7. Epub 2005 Mar 24.

PMID:
15790569
[PubMed - indexed for MEDLINE]
Free Article

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