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Results: 1 to 20 of 75

1.

The Database of Interacting Proteins: 2004 update.

Salwinski L, Miller CS, Smith AJ, Pettit FK, Bowie JU, Eisenberg D.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D449-51.

PMID:
14681454
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions.

Xenarios I, Salwínski L, Duan XJ, Higney P, Kim SM, Eisenberg D.

Nucleic Acids Res. 2002 Jan 1;30(1):303-5.

PMID:
11752321
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

DIP: The Database of Interacting Proteins: 2001 update.

Xenarios I, Fernandez E, Salwinski L, Duan XJ, Thompson MJ, Marcotte EM, Eisenberg D.

Nucleic Acids Res. 2001 Jan 1;29(1):239-41.

PMID:
11125102
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Protein interactions: two methods for assessment of the reliability of high throughput observations.

Deane CM, Salwiński Ł, Xenarios I, Eisenberg D.

Mol Cell Proteomics. 2002 May;1(5):349-56.

PMID:
12118076
[PubMed - indexed for MEDLINE]
Free Article
5.

The MiSink Plugin: Cytoscape as a graphical interface to the Database of Interacting Proteins.

Salwinski L, Eisenberg D.

Bioinformatics. 2007 Aug 15;23(16):2193-5. Epub 2007 Jun 6.

PMID:
17553858
[PubMed - indexed for MEDLINE]
Free Article
6.

DIP: the database of interacting proteins.

Xenarios I, Rice DW, Salwinski L, Baron MK, Marcotte EM, Eisenberg D.

Nucleic Acids Res. 2000 Jan 1;28(1):289-91.

PMID:
10592249
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

IntAct: an open source molecular interaction database.

Hermjakob H, Montecchi-Palazzi L, Lewington C, Mudali S, Kerrien S, Orchard S, Vingron M, Roechert B, Roepstorff P, Valencia A, Margalit H, Armstrong J, Bairoch A, Cesareni G, Sherman D, Apweiler R.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D452-5.

PMID:
14681455
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

The Negatome database: a reference set of non-interacting protein pairs.

Smialowski P, Pagel P, Wong P, Brauner B, Dunger I, Fobo G, Frishman G, Montrone C, Rattei T, Frishman D, Ruepp A.

Nucleic Acids Res. 2010 Jan;38(Database issue):D540-4. doi: 10.1093/nar/gkp1026. Epub 2009 Nov 17.

PMID:
19920129
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

InterDom: a database of putative interacting protein domains for validating predicted protein interactions and complexes.

Ng SK, Zhang Z, Tan SH, Lin K.

Nucleic Acids Res. 2003 Jan 1;31(1):251-4.

PMID:
12519994
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Atlas - a data warehouse for integrative bioinformatics.

Shah SP, Huang Y, Xu T, Yuen MM, Ling J, Ouellette BF.

BMC Bioinformatics. 2005 Feb 21;6:34.

PMID:
15723693
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Human protein reference database as a discovery resource for proteomics.

Peri S, Navarro JD, Kristiansen TZ, Amanchy R, Surendranath V, Muthusamy B, Gandhi TK, Chandrika KN, Deshpande N, Suresh S, Rashmi BP, Shanker K, Padma N, Niranjan V, Harsha HC, Talreja N, Vrushabendra BM, Ramya MA, Yatish AJ, Joy M, Shivashankar HN, Kavitha MP, Menezes M, Choudhury DR, Ghosh N, Saravana R, Chandran S, Mohan S, Jonnalagadda CK, Prasad CK, Kumar-Sinha C, Deshpande KS, Pandey A.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D497-501.

PMID:
14681466
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

The KEGG databases at GenomeNet.

Kanehisa M, Goto S, Kawashima S, Nakaya A.

Nucleic Acids Res. 2002 Jan 1;30(1):42-6.

PMID:
11752249
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Assessment of the reliability of protein-protein interactions and protein function prediction.

Deng M, Sun F, Chen T.

Pac Symp Biocomput. 2003:140-51.

PMID:
12603024
[PubMed - indexed for MEDLINE]
14.

PDTD: a web-accessible protein database for drug target identification.

Gao Z, Li H, Zhang H, Liu X, Kang L, Luo X, Zhu W, Chen K, Wang X, Jiang H.

BMC Bioinformatics. 2008 Feb 19;9:104. doi: 10.1186/1471-2105-9-104.

PMID:
18282303
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Predictome: a database of putative functional links between proteins.

Mellor JC, Yanai I, Clodfelter KH, Mintseris J, DeLisi C.

Nucleic Acids Res. 2002 Jan 1;30(1):306-9.

PMID:
11752322
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Filtering high-throughput protein-protein interaction data using a combination of genomic features.

Patil A, Nakamura H.

BMC Bioinformatics. 2005 Apr 18;6:100.

PMID:
15833142
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Construction of reliable protein-protein interaction networks with a new interaction generality measure.

Saito R, Suzuki H, Hayashizaki Y.

Bioinformatics. 2003 Apr 12;19(6):756-63.

PMID:
12691988
[PubMed - indexed for MEDLINE]
Free Article
18.

DBSubLoc: database of protein subcellular localization.

Guo T, Hua S, Ji X, Sun Z.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D122-4.

PMID:
14681374
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Linking experimental results, biological networks and sequence analysis methods using Ontologies and Generalised Data Structures.

Koehler J, Rawlings C, Verrier P, Mitchell R, Skusa A, Ruegg A, Philippi S.

In Silico Biol. 2005;5(1):33-44.

PMID:
15972003
[PubMed - indexed for MEDLINE]
20.

POINT: a database for the prediction of protein-protein interactions based on the orthologous interactome.

Huang TW, Tien AC, Huang WS, Lee YC, Peng CL, Tseng HH, Kao CY, Huang CY.

Bioinformatics. 2004 Nov 22;20(17):3273-6. Epub 2004 Jun 24.

PMID:
15217821
[PubMed - indexed for MEDLINE]
Free Article

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