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Results: 1 to 20 of 143

1.

The microRNA Registry.

Griffiths-Jones S.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D109-11.

PMID:
14681370
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

miRBase: microRNA sequences, targets and gene nomenclature.

Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A, Enright AJ.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D140-4.

PMID:
16381832
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

miRBase: tools for microRNA genomics.

Griffiths-Jones S, Saini HK, van Dongen S, Enright AJ.

Nucleic Acids Res. 2008 Jan;36(Database issue):D154-8. Epub 2007 Nov 8.

PMID:
17991681
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

miRBase: the microRNA sequence database.

Griffiths-Jones S.

Methods Mol Biol. 2006;342:129-38. Review.

PMID:
16957372
[PubMed - indexed for MEDLINE]
5.

miRBase: microRNA sequences and annotation.

Griffiths-Jones S.

Curr Protoc Bioinformatics. 2010 Mar;Chapter 12:Unit 12.9.1-10. doi: 10.1002/0471250953.bi1209s29.

PMID:
20205188
[PubMed - indexed for MEDLINE]
6.

Computational prediction of microRNA targets.

Wang X.

Methods Mol Biol. 2010;667:283-95. doi: 10.1007/978-1-60761-811-9_19.

PMID:
20827541
[PubMed - indexed for MEDLINE]
7.

miROrtho: computational survey of microRNA genes.

Gerlach D, Kriventseva EV, Rahman N, Vejnar CE, Zdobnov EM.

Nucleic Acids Res. 2009 Jan;37(Database issue):D111-7. doi: 10.1093/nar/gkn707. Epub 2008 Oct 15.

PMID:
18927110
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Rfam: an RNA family database.

Griffiths-Jones S, Bateman A, Marshall M, Khanna A, Eddy SR.

Nucleic Acids Res. 2003 Jan 1;31(1):439-41.

PMID:
12520045
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Ontology-oriented retrieval of putative microRNAs in Vitis vinifera via GrapeMiRNA: a web database of de novo predicted grape microRNAs.

Lazzari B, Caprera A, Cestaro A, Merelli I, Del Corvo M, Fontana P, Milanesi L, Velasco R, Stella A.

BMC Plant Biol. 2009 Jun 29;9:82. doi: 10.1186/1471-2229-9-82.

PMID:
19563653
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

miRNAMap: genomic maps of microRNA genes and their target genes in mammalian genomes.

Hsu PW, Huang HD, Hsu SD, Lin LZ, Tsou AP, Tseng CP, Stadler PF, Washietl S, Hofacker IL.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D135-9.

PMID:
16381831
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Argonaute--a database for gene regulation by mammalian microRNAs.

Shahi P, Loukianiouk S, Bohne-Lang A, Kenzelmann M, Küffer S, Maertens S, Eils R, Gröne HJ, Gretz N, Brors B.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D115-8.

PMID:
16381827
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

TransmiR: a transcription factor-microRNA regulation database.

Wang J, Lu M, Qiu C, Cui Q.

Nucleic Acids Res. 2010 Jan;38(Database issue):D119-22. doi: 10.1093/nar/gkp803. Epub 2009 Sep 28.

PMID:
19786497
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

CID-miRNA: a web server for prediction of novel miRNA precursors in human genome.

Tyagi S, Vaz C, Gupta V, Bhatia R, Maheshwari S, Srinivasan A, Bhattacharya A.

Biochem Biophys Res Commun. 2008 Aug 8;372(4):831-4. doi: 10.1016/j.bbrc.2008.05.134. Epub 2008 Jun 2.

PMID:
18522801
[PubMed - indexed for MEDLINE]
14.

MicroPC (microPC): A comprehensive resource for predicting and comparing plant microRNAs.

Mhuantong W, Wichadakul D.

BMC Genomics. 2009 Aug 7;10:366. doi: 10.1186/1471-2164-10-366.

PMID:
19660144
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

miRGen: a database for the study of animal microRNA genomic organization and function.

Megraw M, Sethupathy P, Corda B, Hatzigeorgiou AG.

Nucleic Acids Res. 2007 Jan;35(Database issue):D149-55. Epub 2006 Nov 15.

PMID:
17108354
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Computational identification of novel microRNAs and targets in Brassica napus.

Xie FL, Huang SQ, Guo K, Xiang AL, Zhu YY, Nie L, Yang ZM.

FEBS Lett. 2007 Apr 3;581(7):1464-74. Epub 2007 Mar 8.

PMID:
17367786
[PubMed - indexed for MEDLINE]
Free Article
17.

PMirP: a pre-microRNA prediction method based on structure-sequence hybrid features.

Zhao D, Wang Y, Luo D, Shi X, Wang L, Xu D, Yu J, Liang Y.

Artif Intell Med. 2010 Jun;49(2):127-32. doi: 10.1016/j.artmed.2010.03.004. Epub 2010 Apr 15.

PMID:
20399081
[PubMed - indexed for MEDLINE]
18.

A bioinformatics tool for linking gene expression profiling results with public databases of microRNA target predictions.

Creighton CJ, Nagaraja AK, Hanash SM, Matzuk MM, Gunaratne PH.

RNA. 2008 Nov;14(11):2290-6. doi: 10.1261/rna.1188208. Epub 2008 Sep 23.

PMID:
18812437
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

MicroRNA identification based on sequence and structure alignment.

Wang X, Zhang J, Li F, Gu J, He T, Zhang X, Li Y.

Bioinformatics. 2005 Sep 15;21(18):3610-4. Epub 2005 Jun 30.

PMID:
15994192
[PubMed - indexed for MEDLINE]
Free Article
20.

miRDB: a microRNA target prediction and functional annotation database with a wiki interface.

Wang X.

RNA. 2008 Jun;14(6):1012-7. doi: 10.1261/rna.965408. Epub 2008 Apr 21.

PMID:
18426918
[PubMed - indexed for MEDLINE]
Free PMC Article

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