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Results: 1 to 20 of 106

1.

The generation and utilization of a cancer-oriented representation of the human transcriptome by using expressed sequence tags.

Brentani H, Caballero OL, Camargo AA, da Silva AM, da Silva WA Jr, Dias Neto E, Grivet M, Gruber A, Guimaraes PE, Hide W, Iseli C, Jongeneel CV, Kelso J, Nagai MA, Ojopi EP, Osorio EC, Reis EM, Riggins GJ, Simpson AJ, de Souza S, Stevenson BJ, Strausberg RL, Tajara EH, Verjovski-Almeida S, Acencio ML, Bengtson MH, Bettoni F, Bodmer WF, Briones MR, Camargo LP, Cavenee W, Cerutti JM, Coelho Andrade LE, Costa dos Santos PC, Ramos Costa MC, da Silva IT, Estécio MR, Sa Ferreira K, Furnari FB, Faria M Jr, Galante PA, Guimaraes GS, Holanda AJ, Kimura ET, Leerkes MR, Lu X, Maciel RM, Martins EA, Massirer KB, Melo AS, Mestriner CA, Miracca EC, Miranda LL, Nobrega FG, Oliveira PS, Paquola AC, Pandolfi JR, Campos Pardini MI, Passetti F, Quackenbush J, Schnabel B, Sogayar MC, Souza JE, Valentini SR, Zaiats AC, Amaral EJ, Arnaldi LA, de Araújo AG, de Bessa SA, Bicknell DC, Ribeiro de Camaro ME, Carraro DM, Carrer H, Carvalho AF, Colin C, Costa F, Curcio C, Guerreiro da Silva ID, Pereira da Silva N, Dellamano M, El-Dorry H, Espreafico EM, Scattone Ferreira AJ, Ayres Ferreira C, Fortes MA, Gama AH, Giannella-Neto D, Giannella ML, Giorgi RR, Goldman GH, Goldman MH, Hackel C, Ho PL, Kimura EM, Kowalski LP, Krieger JE, Leite LC, Lopes A, Luna AM, Mackay A, Mari SK, Marques AA, Martins WK, Montagnini A, Mourão Neto M, Nascimento AL, Neville AM, Nobrega MP, O'Hare MJ, Otsuka AY, Ruas de Melo AI, Paco-Larson ML, Guimarães Pereira G, Pereira da Silva N, Pesquero JB, Pessoa JG, Rahal P, Rainho CA, Rodrigues V, Rogatto SR, Romano CM, Romeiro JG, Rossi BM, Rusticci M, Guerra de Sá R, Sant' Anna SC, Sarmazo ML, Silva TC, Soares FA, Sonati Mde F, de Freitas Sousa J, Queiroz D, Valente V, Vettore AL, Villanova FE, Zago MA, Zalcberg H; Human Cancer Genome Project/Cancer Genome Anatomy Project Annotation Consortium; Human Cancer Genome Project Sequencing Consortium.

Proc Natl Acad Sci U S A. 2003 Nov 11;100(23):13418-23. Epub 2003 Oct 30.

PMID:
14593198
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

A global view of cancer-specific transcript variants by subtractive transcriptome-wide analysis.

He C, Zhou F, Zuo Z, Cheng H, Zhou R.

PLoS One. 2009;4(3):e4732. doi: 10.1371/journal.pone.0004732. Epub 2009 Mar 6.

PMID:
19266097
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Identification of novel highly expressed genes in pancreatic ductal adenocarcinomas through a bioinformatics analysis of expressed sequence tags.

Cao D, Hustinx SR, Sui G, Bala P, Sato N, Martin S, Maitra A, Murphy KM, Cameron JL, Yeo CJ, Kern SE, Goggins M, Pandey A, Hruban RH.

Cancer Biol Ther. 2004 Nov;3(11):1081-9; discussion 1090-1. Epub 2004 Nov 12.

PMID:
15467436
[PubMed - indexed for MEDLINE]
Free Article
4.

Bioinformatic screening of human ESTs for differentially expressed genes in normal and tumor tissues.

Aouacheria A, Navratil V, Barthelaix A, Mouchiroud D, Gautier C.

BMC Genomics. 2006 Apr 26;7:94.

PMID:
16640784
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Analysis of the prostate cancer cell line LNCaP transcriptome using a sequencing-by-synthesis approach.

Bainbridge MN, Warren RL, Hirst M, Romanuik T, Zeng T, Go A, Delaney A, Griffith M, Hickenbotham M, Magrini V, Mardis ER, Sadar MD, Siddiqui AS, Marra MA, Jones SJ.

BMC Genomics. 2006 Sep 29;7:246.

PMID:
17010196
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

A genome-based resource for molecular cardiovascular medicine: toward a compendium of cardiovascular genes.

Hwang DM, Dempsey AA, Wang RX, Rezvani M, Barrans JD, Dai KS, Wang HY, Ma H, Cukerman E, Liu YQ, Gu JR, Zhang JH, Tsui SK, Waye MM, Fung KP, Lee CY, Liew CC.

Circulation. 1997 Dec 16;96(12):4146-203.

PMID:
9416882
[PubMed - indexed for MEDLINE]
Free Article
7.

A comparison of expressed sequence tags (ESTs) to human genomic sequences.

Wolfsberg TG, Landsman D.

Nucleic Acids Res. 1997 Apr 15;25(8):1626-32.

PMID:
9092672
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Identification of alternatively spliced mRNA variants related to cancers by genome-wide ESTs alignment.

Hui L, Zhang X, Wu X, Lin Z, Wang Q, Li Y, Hu G.

Oncogene. 2004 Apr 15;23(17):3013-23.

PMID:
15048092
[PubMed - indexed for MEDLINE]
9.

In silico whole-genome screening for cancer-related single-nucleotide polymorphisms located in human mRNA untranslated regions.

Aouacheria A, Navratil V, López-Pérez R, Gutiérrez NC, Churkin A, Barash D, Mouchiroud D, Gautier C.

BMC Genomics. 2007 Jan 3;8:2.

PMID:
17201911
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Comparative gene-based in silico analysis of transcriptomes in different bovine tissues and (or) organs.

Jiang Z, Wu XL, Garcia MD, Griffin KB, Michal JJ, Ott TL, Gaskins CT, Wright Jr RW.

Genome. 2004 Dec;47(6):1164-72.

PMID:
15644975
[PubMed - indexed for MEDLINE]
11.

Analysis of 10,000 ESTs from lymphocytes of the cynomolgus monkey to improve our understanding of its immune system.

Chen WH, Wang XX, Lin W, He XW, Wu ZQ, Lin Y, Hu SN, Wang XN.

BMC Genomics. 2006 Apr 18;7:82.

PMID:
16618371
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Identification of gastric cancer-related genes using a cDNA microarray containing novel expressed sequence tags expressed in gastric cancer cells.

Kim JM, Sohn HY, Yoon SY, Oh JH, Yang JO, Kim JH, Song KS, Rho SM, Yoo HS, Kim YS, Kim JG, Kim NS.

Clin Cancer Res. 2005 Jan 15;11(2 Pt 1):473-82. Erratum in: Clin Cancer Res. 2005 Apr 15;11(8):3149. Yoo, Hyan Sook [corrected to Yoo, Hyang-Sook].

PMID:
15701830
[PubMed - indexed for MEDLINE]
Free Article
13.

WildSilkbase: an EST database of wild silkmoths.

Arunkumar KP, Tomar A, Daimon T, Shimada T, Nagaraju J.

BMC Genomics. 2008 Jul 17;9:338. doi: 10.1186/1471-2164-9-338.

PMID:
18637161
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Mining expressed sequence tag (EST) libraries for cancer-associated genes.

Schmitt AO.

Methods Mol Biol. 2010;576:89-98. doi: 10.1007/978-1-59745-545-9_6.

PMID:
19882259
[PubMed - indexed for MEDLINE]
15.

Peanut gene expression profiling in developing seeds at different reproduction stages during Aspergillus parasiticus infection.

Guo B, Chen X, Dang P, Scully BT, Liang X, Holbrook CC, Yu J, Culbreath AK.

BMC Dev Biol. 2008 Feb 4;8:12. doi: 10.1186/1471-213X-8-12.

PMID:
18248674
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Transcriptome analysis for Caenorhabditis elegans based on novel expressed sequence tags.

Shin H, Hirst M, Bainbridge MN, Magrini V, Mardis E, Moerman DG, Marra MA, Baillie DL, Jones SJ.

BMC Biol. 2008 Jul 8;6:30. doi: 10.1186/1741-7007-6-30.

PMID:
18611272
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Use of a large-scale Triticeae expressed sequence tag resource to reveal gene expression profiles in hexaploid wheat (Triticum aestivum L.).

Chao S, Lazo GR, You F, Crossman CC, Hummel DD, Lui N, Laudencia-Chingcuanco D, Anderson JA, Close TJ, Dubcovsky J, Gill BS, Gill KS, Gustafson JP, Kianian SF, Lapitan NL, Nguyen HT, Sorrells ME, McGuire PE, Qualset CO, Anderson OD.

Genome. 2006 May;49(5):531-44.

PMID:
16767178
[PubMed - indexed for MEDLINE]
18.

In silico identification of breast cancer genes by combined multiple high throughput analyses.

Shen D, He J, Chang HR.

Int J Mol Med. 2005 Feb;15(2):205-12.

PMID:
15647832
[PubMed - indexed for MEDLINE]
19.

Shotgun sequencing of the human transcriptome with ORF expressed sequence tags.

Dias Neto E, Correa RG, Verjovski-Almeida S, Briones MR, Nagai MA, da Silva W Jr, Zago MA, Bordin S, Costa FF, Goldman GH, Carvalho AF, Matsukuma A, Baia GS, Simpson DH, Brunstein A, de Oliveira PS, Bucher P, Jongeneel CV, O'Hare MJ, Soares F, Brentani RR, Reis LF, de Souza SJ, Simpson AJ.

Proc Natl Acad Sci U S A. 2000 Mar 28;97(7):3491-6.

PMID:
10737800
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

A salmonid EST genomic study: genes, duplications, phylogeny and microarrays.

Koop BF, von Schalburg KR, Leong J, Walker N, Lieph R, Cooper GA, Robb A, Beetz-Sargent M, Holt RA, Moore R, Brahmbhatt S, Rosner J, Rexroad CE 3rd, McGowan CR, Davidson WS.

BMC Genomics. 2008 Nov 17;9:545. doi: 10.1186/1471-2164-9-545.

PMID:
19014685
[PubMed - indexed for MEDLINE]
Free PMC Article

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