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Results: 1 to 20 of 389

1.

Automatic annotation of protein function based on family identification.

Abascal F, Valencia A.

Proteins. 2003 Nov 15;53(3):683-92.

PMID:
14579359
[PubMed - indexed for MEDLINE]
2.

Clustering of proximal sequence space for the identification of protein families.

Abascal F, Valencia A.

Bioinformatics. 2002 Jul;18(7):908-21.

PMID:
12117788
[PubMed - indexed for MEDLINE]
Free Article
3.

Automatic annotation of protein function.

Valencia A.

Curr Opin Struct Biol. 2005 Jun;15(3):267-74. Review.

PMID:
15922590
[PubMed - indexed for MEDLINE]
4.

Clustering the annotation space of proteins.

Kunin V, Ouzounis CA.

BMC Bioinformatics. 2005 Feb 9;6:24.

PMID:
15703069
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

ProFAT: a web-based tool for the functional annotation of protein sequences.

Bradshaw CR, Surendranath V, Habermann B.

BMC Bioinformatics. 2006 Oct 23;7:466.

PMID:
17059594
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

SCOPEC: a database of protein catalytic domains.

George RA, Spriggs RV, Thornton JM, Al-Lazikani B, Swindells MB.

Bioinformatics. 2004 Aug 4;20 Suppl 1:i130-6.

PMID:
15262791
[PubMed - indexed for MEDLINE]
Free Article
7.
8.

On the detection of functionally coherent groups of protein domains with an extension to protein annotation.

McLaughlin WA, Chen K, Hou T, Wang W.

BMC Bioinformatics. 2007 Oct 16;8:390.

PMID:
17937820
[PubMed - indexed for MEDLINE]
Free PMC Article
9.
10.

On the quality of tree-based protein classification.

Lazareva-Ulitsky B, Diemer K, Thomas PD.

Bioinformatics. 2005 May 1;21(9):1876-90. Epub 2005 Jan 12.

PMID:
15647305
[PubMed - indexed for MEDLINE]
Free Article
11.

Mining sequence annotation databanks for association patterns.

Artamonova II, Frishman G, Gelfand MS, Frishman D.

Bioinformatics. 2005 Nov 1;21 Suppl 3:iii49-57.

PMID:
16306393
[PubMed - indexed for MEDLINE]
Free Article
12.

Super paramagnetic clustering of protein sequences.

Tetko IV, Facius A, Ruepp A, Mewes HW.

BMC Bioinformatics. 2005 Apr 1;6:82.

PMID:
15804359
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

ConFunc--functional annotation in the twilight zone.

Wass MN, Sternberg MJ.

Bioinformatics. 2008 Mar 15;24(6):798-806. doi: 10.1093/bioinformatics/btn037. Epub 2008 Feb 8.

PMID:
18263643
[PubMed - indexed for MEDLINE]
Free Article
14.

The development of PIPA: an integrated and automated pipeline for genome-wide protein function annotation.

Yu C, Zavaljevski N, Desai V, Johnson S, Stevens FJ, Reifman J.

BMC Bioinformatics. 2008 Jan 25;9:52. doi: 10.1186/1471-2105-9-52.

PMID:
18221520
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Gene Ontology annotation of the rice blast fungus, Magnaporthe oryzae.

Meng S, Brown DE, Ebbole DJ, Torto-Alalibo T, Oh YY, Deng J, Mitchell TK, Dean RA.

BMC Microbiol. 2009 Feb 19;9 Suppl 1:S8. doi: 10.1186/1471-2180-9-S1-S8. Review.

PMID:
19278556
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

The AnnoLite and AnnoLyze programs for comparative annotation of protein structures.

Marti-Renom MA, Rossi A, Al-Shahrour F, Davis FP, Pieper U, Dopazo J, Sali A.

BMC Bioinformatics. 2007 May 22;8 Suppl 4:S4.

PMID:
17570147
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Position-specific annotation of protein function based on multiple homologs.

Andrade MA.

Proc Int Conf Intell Syst Mol Biol. 1999:28-33.

PMID:
10786283
[PubMed - indexed for MEDLINE]
18.

Ruleminer: a knowledge system for supporting high-throughput protein function annotations.

Yu GX.

J Bioinform Comput Biol. 2004 Dec;2(4):615-37.

PMID:
15617156
[PubMed - indexed for MEDLINE]
19.

FunShift: a database of function shift analysis on protein subfamilies.

Abhiman S, Sonnhammer EL.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D197-200.

PMID:
15608176
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Protein domain identification and improved sequence similarity searching using PSI-BLAST.

George RA, Heringa J.

Proteins. 2002 Sep 1;48(4):672-81.

PMID:
12211035
[PubMed - indexed for MEDLINE]

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