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Results: 1 to 20 of 320

1.

Enthalpy/entropy compensation: influence of DNA flanking sequence on the binding of 7-amino actinomycin D to its primary binding site in short DNA duplexes.

Qu X, Ren J, Riccelli PV, Benight AS, Chaires JB.

Biochemistry. 2003 Oct 21;42(41):11960-7.

PMID:
14556627
[PubMed - indexed for MEDLINE]
2.

Thermodynamic, spectroscopic, and equilibrium binding studies of DNA sequence context effects in four 40 base pair deoxyoligonucleotides.

Vallone PM, Benight AS.

Biochemistry. 2000 Jul 4;39(26):7835-46.

PMID:
10869190
[PubMed - indexed for MEDLINE]
3.

Binding of actinomycin D to the T(G)nT motif of double-stranded DNA: determination of the guanine requirement in nonclassical, non-GpC binding sites.

Bailey SA, Graves DE, Rill R.

Biochemistry. 1994 Sep 27;33(38):11493-500.

PMID:
7918362
[PubMed - indexed for MEDLINE]
4.

Thermodynamic, spectroscopic, and equilibrium binding studies of DNA sequence context effects in six 22-base pair deoxyoligonucleotides.

Riccelli PV, Vallone PM, Kashin I, Faldasz BD, Lane MJ, Benight AS.

Biochemistry. 1999 Aug 24;38(34):11197-208.

PMID:
10460177
[PubMed - indexed for MEDLINE]
5.

Energetic diversity of DNA minor-groove recognition by small molecules displayed through some model ligand-DNA systems.

Lah J, Vesnaver G.

J Mol Biol. 2004 Sep 3;342(1):73-89.

PMID:
15313608
[PubMed - indexed for MEDLINE]
6.

Effect of DNA flanking sequence on charge transport in short DNA duplexes.

Li X, Peng Y, Ren J, Qu X.

Biochemistry. 2006 Nov 14;45(45):13543-50.

PMID:
17087508
[PubMed - indexed for MEDLINE]
7.

Energetics of lesion recognition by a DNA repair protein: thermodynamic characterization of formamidopyrimidine-glycosylase (Fpg) interactions with damaged DNA duplexes.

Minetti CA, Remeta DP, Zharkov DO, Plum GE, Johnson F, Grollman AP, Breslauer KJ.

J Mol Biol. 2003 May 16;328(5):1047-60.

PMID:
12729740
[PubMed - indexed for MEDLINE]
8.
9.

Actinomycin D binds strongly to d(TGTCATTG), a single-stranded DNA devoid of GpC sites.

Chen FM, Sha F.

Biochemistry. 2001 May 1;40(17):5218-25.

PMID:
11318644
[PubMed - indexed for MEDLINE]
10.

Influence of DNA base sequence on the binding energetics of actinomycin D.

Bailey SA, Graves DE, Rill R, Marsch G.

Biochemistry. 1993 Jun 8;32(22):5881-7.

PMID:
8504108
[PubMed - indexed for MEDLINE]
11.

Association of the minor groove binding drug Hoechst 33258 with d(CGCGAATTCGCG)2: volumetric, calorimetric, and spectroscopic characterizations.

Han F, Taulier N, Chalikian TV.

Biochemistry. 2005 Jul 19;44(28):9785-94.

PMID:
16008363
[PubMed - indexed for MEDLINE]
12.

Actinomycin D binds strongly and dissociates slowly at the dGpdC site with flanking T/T mismatches.

Liu C, Chen FM.

Biochemistry. 1996 Dec 17;35(50):16346-53.

PMID:
8973210
[PubMed - indexed for MEDLINE]
13.

The thermodynamics of polyamide-DNA recognition: hairpin polyamide binding in the minor groove of duplex DNA.

Pilch DS, Poklar N, Baird EE, Dervan PB, Breslauer KJ.

Biochemistry. 1999 Feb 16;38(7):2143-51.

PMID:
10026298
[PubMed - indexed for MEDLINE]
14.

Effect of mutation of the Sac7d intercalating residues on the temperature dependence of DNA distortion and binding thermodynamics.

Peters WB, Edmondson SP, Shriver JW.

Biochemistry. 2005 Mar 29;44(12):4794-804.

PMID:
15779906
[PubMed - indexed for MEDLINE]
15.

Binding specificities of actinomycin D to non-self-complementary -XGCY-tetranucleotide sequences.

Chen FM.

Biochemistry. 1992 Jul 14;31(27):6223-8.

PMID:
1627564
[PubMed - indexed for MEDLINE]
16.

Footprinting of echinomycin and actinomycin D on DNA molecules asymmetrically substituted with inosine and/or 2,6-diaminopurine.

Jennewein S, Waring MJ.

Nucleic Acids Res. 1997 Apr 15;25(8):1502-10.

PMID:
9092655
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Influence of sequence context and length on the structure and stability of triplet repeat DNA oligomers.

Paiva AM, Sheardy RD.

Biochemistry. 2004 Nov 9;43(44):14218-27.

PMID:
15518572
[PubMed - indexed for MEDLINE]
18.

Binding of actinomycin D to DNA: evidence for a nonclassical high-affinity binding mode that does not require GpC sites.

Snyder JG, Hartman NG, D'Estantoit BL, Kennard O, Remeta DP, Breslauer KJ.

Proc Natl Acad Sci U S A. 1989 Jun;86(11):3968-72.

PMID:
2726760
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Thermodynamic investigation of the association of ethidium, propidium and bis-ethidium to DNA hairpins.

Rentzeperis D, Medero M, Marky LA.

Bioorg Med Chem. 1995 Jun;3(6):751-9.

PMID:
7582953
[PubMed - indexed for MEDLINE]
20.

Water regulation of actinomycin-D binding to DNA: the interplay among drug affinity, DNA long-range conformation, and hydration.

Ruggiero Neto J, Colombo MF.

Biopolymers. 2000 Jan;53(1):46-59.

PMID:
10644950
[PubMed - indexed for MEDLINE]

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