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Results: 1 to 20 of 125

1.

Gene loss, protein sequence divergence, gene dispensability, expression level, and interactivity are correlated in eukaryotic evolution.

Krylov DM, Wolf YI, Rogozin IB, Koonin EV.

Genome Res. 2003 Oct;13(10):2229-35.

PMID:
14525925
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes.

Koonin EV, Fedorova ND, Jackson JD, Jacobs AR, Krylov DM, Makarova KS, Mazumder R, Mekhedov SL, Nikolskaya AN, Rao BS, Rogozin IB, Smirnov S, Sorokin AV, Sverdlov AV, Vasudevan S, Wolf YI, Yin JJ, Natale DA.

Genome Biol. 2004;5(2):R7. Epub 2004 Jan 15.

PMID:
14759257
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Schizosaccharomyces pombe essential genes: a pilot study.

Decottignies A, Sanchez-Perez I, Nurse P.

Genome Res. 2003 Mar;13(3):399-406.

PMID:
12618370
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

The COG database: an updated version includes eukaryotes.

Tatusov RL, Fedorova ND, Jackson JD, Jacobs AR, Kiryutin B, Koonin EV, Krylov DM, Mazumder R, Mekhedov SL, Nikolskaya AN, Rao BS, Smirnov S, Sverdlov AV, Vasudevan S, Wolf YI, Yin JJ, Natale DA.

BMC Bioinformatics. 2003 Sep 11;4:41. Epub 2003 Sep 11.

PMID:
12969510
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Protein dispensability and rate of evolution.

Hirsh AE, Fraser HB.

Nature. 2001 Jun 28;411(6841):1046-9.

PMID:
11429604
[PubMed - indexed for MEDLINE]
7.

Asymmetric sequence divergence of duplicate genes.

Conant GC, Wagner A.

Genome Res. 2003 Sep;13(9):2052-8.

PMID:
12952876
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Isolation and characterization of rad51 orthologs from Coprinus cinereus and Lycopersicon esculentum, and phylogenetic analysis of eukaryotic recA homologs.

Stassen NY, Logsdon JM Jr, Vora GJ, Offenberg HH, Palmer JD, Zolan ME.

Curr Genet. 1997 Feb;31(2):144-57.

PMID:
9021132
[PubMed - indexed for MEDLINE]
9.

Large-scale comparison of fungal sequence information: mechanisms of innovation in Neurospora crassa and gene loss in Saccharomyces cerevisiae.

Braun EL, Halpern AL, Nelson MA, Natvig DO.

Genome Res. 2000 Apr;10(4):416-30.

PMID:
10779483
[PubMed - indexed for MEDLINE]
Free Article
10.

Gene loss rate: a probabilistic measure for the conservation of eukaryotic genes.

Borenstein E, Shlomi T, Ruppin E, Sharan R.

Nucleic Acids Res. 2007;35(1):e7. Epub 2006 Dec 7.

PMID:
17158152
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Accelerated evolutionary rate may be responsible for the emergence of lineage-specific genes in ascomycota.

Cai JJ, Woo PC, Lau SK, Smith DK, Yuen KY.

J Mol Evol. 2006 Jul;63(1):1-11. Epub 2006 Jun 3.

PMID:
16755356
[PubMed - indexed for MEDLINE]
12.

Innovation from reduction: gene loss, domain loss and sequence divergence in genome evolution.

Braun EL.

Appl Bioinformatics. 2003;2(1):13-34. Review.

PMID:
15130831
[PubMed - indexed for MEDLINE]
13.

Significant impact of protein dispensability on the instantaneous rate of protein evolution.

Zhang J, He X.

Mol Biol Evol. 2005 Apr;22(4):1147-55. Epub 2005 Feb 2.

PMID:
15689524
[PubMed - indexed for MEDLINE]
Free Article
14.

Analysis of evolution of exon-intron structure of eukaryotic genes.

Rogozin IB, Sverdlov AV, Babenko VN, Koonin EV.

Brief Bioinform. 2005 Jun;6(2):118-34. Review.

PMID:
15975222
[PubMed - indexed for MEDLINE]
Free Article
15.

Translation elongation factor-3 (EF-3): an evolving eukaryotic ribosomal protein?

Belfield GP, Ross-Smith NJ, Tuite MF.

J Mol Evol. 1995 Sep;41(3):376-87.

PMID:
7563124
[PubMed - indexed for MEDLINE]
16.

Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe.

Kim DU, Hayles J, Kim D, Wood V, Park HO, Won M, Yoo HS, Duhig T, Nam M, Palmer G, Han S, Jeffery L, Baek ST, Lee H, Shim YS, Lee M, Kim L, Heo KS, Noh EJ, Lee AR, Jang YJ, Chung KS, Choi SJ, Park JY, Park Y, Kim HM, Park SK, Park HJ, Kang EJ, Kim HB, Kang HS, Park HM, Kim K, Song K, Song KB, Nurse P, Hoe KL.

Nat Biotechnol. 2010 Jun;28(6):617-23. doi: 10.1038/nbt.1628. Epub 2010 May 16. Erratum in: Nat Biotechnol. 2010 Dec;28(12):1308.

PMID:
20473289
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

The Schizosaccharomyces pombe rhp3+ gene required for DNA repair and cell viability is functionally interchangeable with the RAD3 gene of Saccharomyces cerevisiae.

Reynolds PR, Biggar S, Prakash L, Prakash S.

Nucleic Acids Res. 1992 May 11;20(9):2327-34.

PMID:
1534406
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Genetic structure and evolution of the Vps25 family, a yeast ESCRT-II component.

Slater R, Bishop NE.

BMC Evol Biol. 2006 Aug 4;6:59.

PMID:
16889659
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Schizosaccharomyces pombe stt3+ is a functional homologue of Saccharomyces cerevisiae STT3 which regulates oligosaccharyltransferase activity.

Yoshida S, Matsuura A, Merregaert J, Anraku Y.

Yeast. 1999 Apr;15(6):497-505.

PMID:
10234787
[PubMed - indexed for MEDLINE]
20.

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