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Items: 1 to 20 of 160

1.

Oligodeoxyribonucleotide probe accessibility on a three-dimensional DNA microarray surface and the effect of hybridization time on the accuracy of expression ratios.

Dorris DR, Nguyen A, Gieser L, Lockner R, Lublinsky A, Patterson M, Touma E, Sendera TJ, Elghanian R, Mazumder A.

BMC Biotechnol. 2003 Jun 11;3:6. Epub 2003 Jun 11.

2.

Strong position-dependent effects of sequence mismatches on signal ratios measured using long oligonucleotide microarrays.

Rennie C, Noyes HA, Kemp SJ, Hulme H, Brass A, Hoyle DC.

BMC Genomics. 2008 Jul 3;9:317. doi: 10.1186/1471-2164-9-317.

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Analysis of crucial factors resulting in microarray hybridization failure.

Wei T, Pearson MN, Armstrong K, Blohm D, Liu J.

Mol Biosyst. 2012 Apr;8(4):1325-38. doi: 10.1039/c2mb05300d. Epub 2012 Feb 7.

PMID:
22314967
5.

Nonspecific hybridization scaling of microarray expression estimates: a physicochemical approach for chip-to-chip normalization.

Binder H, Brücker J, Burden CJ.

J Phys Chem B. 2009 Mar 5;113(9):2874-95. doi: 10.1021/jp808118m.

PMID:
19708217
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Microarray results improve significantly as hybridization approaches equilibrium.

Sartor M, Schwanekamp J, Halbleib D, Mohamed I, Karyala S, Medvedovic M, Tomlinson CR.

Biotechniques. 2004 May;36(5):790-6.

PMID:
15152598
8.

UPS 2.0: unique probe selector for probe design and oligonucleotide microarrays at the pangenomic/genomic level.

Chen SH, Lo CZ, Su SY, Kuo BH, Hsiung CA, Lin CY.

BMC Genomics. 2010 Dec 2;11 Suppl 4:S6. doi: 10.1186/1471-2164-11-S4-S6.

9.

The effects of mismatches on hybridization in DNA microarrays: determination of nearest neighbor parameters.

Hooyberghs J, Van Hummelen P, Carlon E.

Nucleic Acids Res. 2009 Apr;37(7):e53. doi: 10.1093/nar/gkp109. Epub 2009 Mar 6.

10.

Assessment of 35mer amino-modified oligonucleotide based microarray with bacterial samples.

Calevro F, Charles H, Reymond N, Dugas V, Cloarec JP, Bernillon J, Rahbé Y, Febvay G, Fayard JM.

J Microbiol Methods. 2004 May;57(2):207-18.

PMID:
15063061
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Use of hybridization melting kinetics for detecting Phytophthora species using three-dimensional microarrays: demonstration of a novel concept for the differentiation of detection targets.

Anderson N, Szemes M, O'Brien P, de Weerdt M, Schoen C, Boender P, Bonants P.

Mycol Res. 2006 Jun;110(Pt 6):664-71. Epub 2006 Jun 12.

PMID:
16769210
14.

Effects of target length on the hybridization efficiency and specificity of rRNA-based oligonucleotide microarrays.

Liu WT, Guo H, Wu JH.

Appl Environ Microbiol. 2007 Jan;73(1):73-82. Epub 2006 Oct 27.

15.

Oligonucleotide microarrays with stem-loop probes: enhancing the hybridization of nucleic acids for sensitive analysis.

Mahajan S, Swami A, Sethi D, Kumar P, Gupta KC.

Bioorg Med Chem Lett. 2008 Jun 15;18(12):3585-8. doi: 10.1016/j.bmcl.2008.05.007. Epub 2008 May 4.

PMID:
18490158
16.

Large scale real-time PCR validation on gene expression measurements from two commercial long-oligonucleotide microarrays.

Wang Y, Barbacioru C, Hyland F, Xiao W, Hunkapiller KL, Blake J, Chan F, Gonzalez C, Zhang L, Samaha RR.

BMC Genomics. 2006 Mar 21;7:59.

17.

Absolute mRNA concentrations from sequence-specific calibration of oligonucleotide arrays.

Hekstra D, Taussig AR, Magnasco M, Naef F.

Nucleic Acids Res. 2003 Apr 1;31(7):1962-8.

18.

Design and analysis of mismatch probes for long oligonucleotide microarrays.

Deng Y, He Z, Van Nostrand JD, Zhou J.

BMC Genomics. 2008 Oct 17;9:491. doi: 10.1186/1471-2164-9-491.

19.

Design and evaluation of Actichip, a thematic microarray for the study of the actin cytoskeleton.

Muller J, Mehlen A, Vetter G, Yatskou M, Muller A, Chalmel F, Poch O, Friederich E, Vallar L.

BMC Genomics. 2007 Aug 29;8:294.

20.
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