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Similar articles for PubMed (Select 12799357)

1.

Large-scale identification and analysis of genome-wide single-nucleotide polymorphisms for mapping in Arabidopsis thaliana.

Schmid KJ, Sorensen TR, Stracke R, Torjek O, Altmann T, Mitchell-Olds T, Weisshaar B.

Genome Res. 2003 Jun;13(6A):1250-7.

2.

A set of EST-SNPs for map saturation and cultivar identification in melon.

Deleu W, Esteras C, Roig C, González-To M, Fernández-Silva I, Gonzalez-Ibeas D, Blanca J, Aranda MA, Arús P, Nuez F, Monforte AJ, Picó MB, Garcia-Mas J.

BMC Plant Biol. 2009 Jul 15;9:90. doi: 10.1186/1471-2229-9-90.

3.
4.

Evidence for a large-scale population structure of Arabidopsis thaliana from genome-wide single nucleotide polymorphism markers.

Schmid KJ, Törjék O, Meyer R, Schmuths H, Hoffmann MH, Altmann T.

Theor Appl Genet. 2006 Apr;112(6):1104-14. Epub 2006 Feb 2.

PMID:
16453134
5.

Common sequence polymorphisms shaping genetic diversity in Arabidopsis thaliana.

Clark RM, Schweikert G, Toomajian C, Ossowski S, Zeller G, Shinn P, Warthmann N, Hu TT, Fu G, Hinds DA, Chen H, Frazer KA, Huson DH, Schölkopf B, Nordborg M, Rätsch G, Ecker JR, Weigel D.

Science. 2007 Jul 20;317(5836):338-42.

6.

Identification of EMS-induced causal mutations in a non-reference Arabidopsis thaliana accession by whole genome sequencing.

Uchida N, Sakamoto T, Kurata T, Tasaka M.

Plant Cell Physiol. 2011 Apr;52(4):716-22. doi: 10.1093/pcp/pcr029. Epub 2011 Mar 11.

PMID:
21398646
8.

Sequencing of natural strains of Arabidopsis thaliana with short reads.

Ossowski S, Schneeberger K, Clark RM, Lanz C, Warthmann N, Weigel D.

Genome Res. 2008 Dec;18(12):2024-33. doi: 10.1101/gr.080200.108. Epub 2008 Sep 25.

9.

Marker development for the genetic study of natural variation in Arabidopsis thaliana.

Nemri A, Neff MM, Burrell M, Jones JD, Studholme DJ.

Bioinformatics. 2007 Nov 15;23(22):3108-9.

10.

EST-derived single nucleotide polymorphism markers for assembling genetic and physical maps of the barley genome.

Kota R, Varshney RK, Prasad M, Zhang H, Stein N, Graner A.

Funct Integr Genomics. 2008 Aug;8(3):223-33. Epub 2007 Oct 30.

PMID:
17968603
11.

Discovery of high-confidence single nucleotide polymorphisms from large-scale de novo analysis of leaf transcripts of Aegilops tauschii, a wild wheat progenitor.

Iehisa JC, Shimizu A, Sato K, Nasuda S, Takumi S.

DNA Res. 2012 Dec;19(6):487-97. doi: 10.1093/dnares/dss028. Epub 2012 Nov 2.

12.

Genome-wide mapping with biallelic markers in Arabidopsis thaliana.

Cho RJ, Mindrinos M, Richards DR, Sapolsky RJ, Anderson M, Drenkard E, Dewdney J, Reuber TL, Stammers M, Federspiel N, Theologis A, Yang WH, Hubbell E, Au M, Chung EY, Lashkari D, Lemieux B, Dean C, Lipshutz RJ, Ausubel FM, Davis RW, Oefner PJ.

Nat Genet. 1999 Oct;23(2):203-7.

PMID:
10508518
13.

Genome-wide SNPs and re-sequencing of growth habit and inflorescence genes in barley: implications for association mapping in germplasm arrays varying in size and structure.

Cuesta-Marcos A, Szucs P, Close TJ, Filichkin T, Muehlbauer GJ, Smith KP, Hayes PM.

BMC Genomics. 2010 Dec 15;11:707. doi: 10.1186/1471-2164-11-707.

14.

A collection of INDEL markers for map-based cloning in seven Arabidopsis accessions.

Păcurar DI, Păcurar ML, Street N, Bussell JD, Pop TI, Gutierrez L, Bellini C.

J Exp Bot. 2012 Apr;63(7):2491-501. doi: 10.1093/jxb/err422. Epub 2012 Jan 25.

15.

DNA fingerprinting and new tools for fine-scale discrimination of Arabidopsis thaliana accessions.

Simon M, Simon A, Martins F, Botran L, Tisné S, Granier F, Loudet O, Camilleri C.

Plant J. 2012 Mar;69(6):1094-101. doi: 10.1111/j.1365-313X.2011.04852.x. Epub 2011 Dec 28.

PMID:
22077701
16.

Genome-wide discovery of DNA polymorphism in Brassica rapa.

Park S, Yu HJ, Mun JH, Lee SC.

Mol Genet Genomics. 2010 Feb;283(2):135-45. doi: 10.1007/s00438-009-0504-0. Epub 2009 Dec 19.

PMID:
20024583
17.

Generation and mapping of AFLP, SSRs and SNPs in Lycopersicon esculentum.

Suliman-Pollatschek S, Kashkush K, Shats H, Hillel J, Lavi U.

Cell Mol Biol Lett. 2002;7(2A):583-97.

PMID:
12378264
18.

Association mapping of cadmium, copper and hydrogen peroxide tolerance of roots and translocation capacities of cadmium and copper in Arabidopsis thaliana.

Tazib T, Kobayashi Y, Ikka T, Zhao CR, Iuchi S, Kobayashi M, Kimura K, Koyama H.

Physiol Plant. 2009 Nov;137(3):235-48. doi: 10.1111/j.1399-3054.2009.01286.x.

PMID:
19832939
19.

Using cDNA and genomic sequences as tools to develop SNP strategies in cassava (Manihot esculenta Crantz).

Lopez C, Piégu B, Cooke R, Delseny M, Tohme J, Verdier V.

Theor Appl Genet. 2005 Feb;110(3):425-31. Epub 2005 Jan 14.

PMID:
15650816
20.

Coverage-based consensus calling (CbCC) of short sequence reads and comparison of CbCC results to identify SNPs in chickpea (Cicer arietinum; Fabaceae), a crop species without a reference genome.

Azam S, Thakur V, Ruperao P, Shah T, Balaji J, Amindala B, Farmer AD, Studholme DJ, May GD, Edwards D, Jones JD, Varshney RK.

Am J Bot. 2012 Feb;99(2):186-92. doi: 10.3732/ajb.1100419. Epub 2012 Feb 1.

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