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Items: 1 to 20 of 187

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Empirical models for substitution in ribosomal RNA.

Smith AD, Lui TW, Tillier ER.

Mol Biol Evol. 2004 Mar;21(3):419-27. Epub 2003 Dec 5.

4.

Phylogenetic inference with weighted codon evolutionary distances.

Criscuolo A, Michel CJ.

J Mol Evol. 2009 Apr;68(4):377-92. doi: 10.1007/s00239-009-9212-y. Epub 2009 Mar 24.

PMID:
19308635
5.

Fast computation of distance estimators.

Elias I, Lagergren J.

BMC Bioinformatics. 2007 Mar 13;8:89.

6.

Scoredist: a simple and robust protein sequence distance estimator.

Sonnhammer EL, Hollich V.

BMC Bioinformatics. 2005 Apr 27;6:108.

7.

On the quality of tree-based protein classification.

Lazareva-Ulitsky B, Diemer K, Thomas PD.

Bioinformatics. 2005 May 1;21(9):1876-90. Epub 2005 Jan 12.

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10.

Getting a tree fast: Neighbor Joining, FastME, and distance-based methods.

Desper R, Gascuel O.

Curr Protoc Bioinformatics. 2006 Oct;Chapter 6:Unit 6.3. doi: 10.1002/0471250953.bi0603s15.

PMID:
18428768
11.

Tree and rate estimation by local evaluation of heterochronous nucleotide data.

Yang Z, O'Brien JD, Zheng X, Zhu HQ, She ZS.

Bioinformatics. 2007 Jan 15;23(2):169-76. Epub 2006 Nov 16.

13.

Prospects for inferring very large phylogenies by using the neighbor-joining method.

Tamura K, Nei M, Kumar S.

Proc Natl Acad Sci U S A. 2004 Jul 27;101(30):11030-5. Epub 2004 Jul 16.

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Estimation of reversible substitution matrices from multiple pairs of sequences.

Arvestad L, Bruno WJ.

J Mol Evol. 1997 Dec;45(6):696-703.

PMID:
9419247
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17.

Angiosperm divergence times: the effect of genes, codon positions, and time constraints.

Magallón SA, Sanderson MJ.

Evolution. 2005 Aug;59(8):1653-70.

PMID:
16329238
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19.

Increased accuracy in analytical molecular distance estimation.

Pollock DD.

Theor Popul Biol. 1998 Aug;54(1):78-90.

PMID:
9680491
20.

Toward extracting all phylogenetic information from matrices of evolutionary distances.

Roch S.

Science. 2010 Mar 12;327(5971):1376-9. doi: 10.1126/science.1182300.

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