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Results: 1 to 20 of 101

1.

The accuracy of ribosomal RNA comparative structure models.

Gutell RR, Lee JC, Cannone JJ.

Curr Opin Struct Biol. 2002 Jun;12(3):301-10. Review.

PMID:
12127448
[PubMed - indexed for MEDLINE]
2.

The lonepair triloop: a new motif in RNA structure.

Lee JC, Cannone JJ, Gutell RR.

J Mol Biol. 2003 Jan 3;325(1):65-83.

PMID:
12473452
[PubMed - indexed for MEDLINE]
3.
4.

Lessons from an evolving rRNA: 16S and 23S rRNA structures from a comparative perspective.

Gutell RR, Larsen N, Woese CR.

Microbiol Rev. 1994 Mar;58(1):10-26. Review.

PMID:
8177168
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

X-ray crystal structures of 70S ribosome functional complexes.

Cate JH, Yusupov MM, Yusupova GZ, Earnest TN, Noller HF.

Science. 1999 Sep 24;285(5436):2095-104.

PMID:
10497122
[PubMed - indexed for MEDLINE]
Free Article
6.

A comparison of the crystal structures of eukaryotic and bacterial SSU ribosomal RNAs reveals common structural features in the hypervariable regions.

Lee JC, Gutell RR.

PLoS One. 2012;7(5):e38203. doi: 10.1371/journal.pone.0038203. Epub 2012 May 31.

PMID:
22693601
[PubMed - indexed for MEDLINE]
Free PMC Article
7.
8.

Sequence and structural conservation in RNA ribose zippers.

Tamura M, Holbrook SR.

J Mol Biol. 2002 Jul 12;320(3):455-74.

PMID:
12096903
[PubMed - indexed for MEDLINE]
9.

Structure and dynamics of ribosomal RNA.

Woodson SA, Leontis NB.

Curr Opin Struct Biol. 1998 Jun;8(3):294-300. Review.

PMID:
9666324
[PubMed - indexed for MEDLINE]
10.

Evaluation of the suitability of free-energy minimization using nearest-neighbor energy parameters for RNA secondary structure prediction.

Doshi KJ, Cannone JJ, Cobaugh CW, Gutell RR.

BMC Bioinformatics. 2004 Aug 5;5:105.

PMID:
15296519
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Diversity of base-pair conformations and their occurrence in rRNA structure and RNA structural motifs.

Lee JC, Gutell RR.

J Mol Biol. 2004 Dec 10;344(5):1225-49.

PMID:
15561141
[PubMed - indexed for MEDLINE]
12.

The 16S-like, 5.8S and 23S-like rRNAs of the two varieties of Cryptococcus neoformans: sequence, secondary structure, phylogenetic analysis and restriction fragment polymorphisms.

Fan M, Currie BP, Gutell RR, Ragan MA, Casadevall A.

J Med Vet Mycol. 1994;32(3):163-80.

PMID:
7525916
[PubMed - indexed for MEDLINE]
13.

An analysis of large rRNA sequences folded by a thermodynamic method.

Fields DS, Gutell RR.

Fold Des. 1996;1(6):419-30.

PMID:
9080188
[PubMed - indexed for MEDLINE]
14.

The 23S ribosomal RNA higher-order structure of Pseudomonas cepacia and other prokaryotes.

Höpfl P, Ludwig W, Schleifer KH, Larsen N.

Eur J Biochem. 1989 Nov 6;185(2):355-64.

PMID:
2583187
[PubMed - indexed for MEDLINE]
Free Article
15.

Evaluation of sequence alignments and oligonucleotide probes with respect to three-dimensional structure of ribosomal RNA using ARB software package.

Kumar Y, Westram R, Kipfer P, Meier H, Ludwig W.

BMC Bioinformatics. 2006 May 4;7:240.

PMID:
16672074
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Organization and nucleotide sequence analysis of a ribosomal RNA gene cluster from Streptomyces ambofaciens.

Pernodet JL, Boccard F, Alegre MT, Gagnat J, Guérineau M.

Gene. 1989 Jun 30;79(1):33-46.

PMID:
2777089
[PubMed - indexed for MEDLINE]
17.

Structural constraints identified with covariation analysis in ribosomal RNA.

Shang L, Xu W, Ozer S, Gutell RR.

PLoS One. 2012;7(6):e39383. doi: 10.1371/journal.pone.0039383. Epub 2012 Jun 19.

PMID:
22724009
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Structure and function of ribosomal RNA.

Noller HF, Green R, Heilek G, Hoffarth V, Hüttenhofer A, Joseph S, Lee I, Lieberman K, Mankin A, Merryman C, et al.

Biochem Cell Biol. 1995 Nov-Dec;73(11-12):997-1009. Review. Erratum in: Biochem Cell Biol 1996;74(3):417.

PMID:
8722015
[PubMed - indexed for MEDLINE]
19.

Nonbridging phosphate oxygens in 16S rRNA important for 30S subunit assembly and association with the 50S ribosomal subunit.

Ghosh S, Joseph S.

RNA. 2005 May;11(5):657-67. Epub 2005 Apr 5.

PMID:
15811917
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Prediction of the recognition sites on 16S and 23S rRNAs from E. coli for the formation of 16S-23S rRNA complex.

Thanaraj TA, Kolaskar AS, Pandit MW.

J Biomol Struct Dyn. 1988 Dec;6(3):587-92.

PMID:
3078239
[PubMed - indexed for MEDLINE]

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