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Results: 1 to 20 of 76

1.

DIAN: a novel algorithm for genome ontological classification.

Pouliot Y, Gao J, Su QJ, Liu GG, Ling XB.

Genome Res. 2001 Oct;11(10):1766-79.

PMID:
11591654
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

The development of PIPA: an integrated and automated pipeline for genome-wide protein function annotation.

Yu C, Zavaljevski N, Desai V, Johnson S, Stevens FJ, Reifman J.

BMC Bioinformatics. 2008 Jan 25;9:52. doi: 10.1186/1471-2105-9-52.

PMID:
18221520
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Linking experimental results, biological networks and sequence analysis methods using Ontologies and Generalised Data Structures.

Koehler J, Rawlings C, Verrier P, Mitchell R, Skusa A, Ruegg A, Philippi S.

In Silico Biol. 2005;5(1):33-44.

PMID:
15972003
[PubMed - indexed for MEDLINE]
4.

Beyond the data deluge: data integration and bio-ontologies.

Blake JA, Bult CJ.

J Biomed Inform. 2006 Jun;39(3):314-20. Epub 2006 Feb 21.

PMID:
16564748
[PubMed - indexed for MEDLINE]
Free Article
5.

Visualizing the genome: techniques for presenting human genome data and annotations.

Loraine AE, Helt GA.

BMC Bioinformatics. 2002 Jul 30;3:19.

PMID:
12149135
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

'PACLIMS': a component LIM system for high-throughput functional genomic analysis.

Donofrio N, Rajagopalon R, Brown D, Diener S, Windham D, Nolin S, Floyd A, Mitchell T, Galadima N, Tucker S, Orbach MJ, Patel G, Farman M, Pampanwar V, Soderlund C, Lee YH, Dean RA.

BMC Bioinformatics. 2005 Apr 12;6:94.

PMID:
15826298
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Genome annotation of Anopheles gambiae using mass spectrometry-derived data.

Kalume DE, Peri S, Reddy R, Zhong J, Okulate M, Kumar N, Pandey A.

BMC Genomics. 2005 Sep 19;6:128.

PMID:
16171517
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Automatic annotation of protein function based on family identification.

Abascal F, Valencia A.

Proteins. 2003 Nov 15;53(3):683-92.

PMID:
14579359
[PubMed - indexed for MEDLINE]
9.

Computational function assignment for potential drug targets: from single genes to cellular systems.

Nagl SB.

Curr Drug Targets. 2002 Oct;3(5):387-99. Review.

PMID:
12182230
[PubMed - indexed for MEDLINE]
10.

In silico characterization of proteins: UniProt, InterPro and Integr8.

Mulder NJ, Kersey P, Pruess M, Apweiler R.

Mol Biotechnol. 2008 Feb;38(2):165-77. doi: 10.1007/s12033-007-9003-x. Epub 2007 Oct 4. Review.

PMID:
18219596
[PubMed - indexed for MEDLINE]
11.

Biological information: making it accessible and integrated (and trying to make sense of it).

Hubbard T.

Bioinformatics. 2002;18 Suppl 2:S140.

PMID:
12385995
[PubMed - indexed for MEDLINE]
Free Article
12.

Protein structure prediction in genomics.

Jones DT.

Brief Bioinform. 2001 May;2(2):111-25. Review.

PMID:
11465730
[PubMed - indexed for MEDLINE]
Free Article
13.

Large-scale protein annotation through gene ontology.

Xie H, Wasserman A, Levine Z, Novik A, Grebinskiy V, Shoshan A, Mintz L.

Genome Res. 2002 May;12(5):785-94.

PMID:
11997345
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

GeneNotes--a novel information management software for biologists.

Hong P, Wong WH.

BMC Bioinformatics. 2005 Feb 1;6:20.

PMID:
15686593
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

MitoRes: a resource of nuclear-encoded mitochondrial genes and their products in Metazoa.

Catalano D, Licciulli F, Turi A, Grillo G, Saccone C, D'Elia D.

BMC Bioinformatics. 2006 Jan 24;7:36.

PMID:
16433928
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Pathway databases.

Schaefer CF.

Ann N Y Acad Sci. 2004 May;1020:77-91. Review.

PMID:
15208185
[PubMed - indexed for MEDLINE]
17.

Barnacle: an assembly algorithm for clone-based sequences of whole genomes.

Choi V, Farach-Colton M.

Gene. 2003 Nov 27;320:165-76.

PMID:
14597400
[PubMed - indexed for MEDLINE]
18.

Assigning new GO annotations to protein data bank sequences by combining structure and sequence homology.

Ponomarenko JV, Bourne PE, Shindyalov IN.

Proteins. 2005 Mar 1;58(4):855-65.

PMID:
15645518
[PubMed - indexed for MEDLINE]
19.

Fast model-based protein homology detection without alignment.

Hochreiter S, Heusel M, Obermayer K.

Bioinformatics. 2007 Jul 15;23(14):1728-36. Epub 2007 May 8.

PMID:
17488755
[PubMed - indexed for MEDLINE]
Free Article
20.

A lock-and-key model for protein-protein interactions.

Morrison JL, Breitling R, Higham DJ, Gilbert DR.

Bioinformatics. 2006 Aug 15;22(16):2012-9. Epub 2006 Jun 20.

PMID:
16787977
[PubMed - indexed for MEDLINE]
Free Article

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