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Items: 1 to 20 of 111

1.

AA.AG@helix.ends: A:A and A:G base-pairs at the ends of 16 S and 23 S rRNA helices.

Elgavish T, Cannone JJ, Lee JC, Harvey SC, Gutell RR.

J Mol Biol. 2001 Jul 20;310(4):735-53.

PMID:
11453684
2.

A story: unpaired adenosine bases in ribosomal RNAs.

Gutell RR, Cannone JJ, Shang Z, Du Y, Serra MJ.

J Mol Biol. 2000 Dec 1;304(3):335-54.

PMID:
11090278
3.

The 3D arrangement of the 23 S and 5 S rRNA in the Escherichia coli 50 S ribosomal subunit based on a cryo-electron microscopic reconstruction at 7.5 A resolution.

Mueller F, Sommer I, Baranov P, Matadeen R, Stoldt M, Wöhnert J, Görlach M, van Heel M, Brimacombe R.

J Mol Biol. 2000 Apr 21;298(1):35-59.

PMID:
10756104
4.

Predicting U-turns in ribosomal RNA with comparative sequence analysis.

Gutell RR, Cannone JJ, Konings D, Gautheret D.

J Mol Biol. 2000 Jul 21;300(4):791-803.

PMID:
10891269
5.

Base-pairing of 23 S rRNA ends is essential for ribosomal large subunit assembly.

Liiv A, Remme J.

J Mol Biol. 1998 Feb 27;276(3):537-45.

PMID:
9551095
6.
7.

Unique tertiary and neighbor interactions determine conservation patterns of Cis Watson-Crick A/G base-pairs.

Sponer J, Mokdad A, Sponer JE, Spacková N, Leszczynski J, Leontis NB.

J Mol Biol. 2003 Jul 25;330(5):967-78.

PMID:
12860120
8.

Structure and function of the conserved 690 hairpin in Escherichia coli 16 S ribosomal RNA: analysis of the stem nucleotides.

Morosyuk SV, Lee K, SantaLucia J Jr, Cunningham PR.

J Mol Biol. 2000 Jun 30;300(1):113-26.

PMID:
10864503
9.

Structural and evolutionary classification of G/U wobble basepairs in the ribosome.

Mokdad A, Krasovska MV, Sponer J, Leontis NB.

Nucleic Acids Res. 2006 Mar 6;34(5):1326-41. Print 2006.

10.

Sequence and structural conservation in RNA ribose zippers.

Tamura M, Holbrook SR.

J Mol Biol. 2002 Jul 12;320(3):455-74.

PMID:
12096903
11.

Structural constraints identified with covariation analysis in ribosomal RNA.

Shang L, Xu W, Ozer S, Gutell RR.

PLoS One. 2012;7(6):e39383. doi: 10.1371/journal.pone.0039383. Epub 2012 Jun 19.

12.

A major family of motifs involving G.A mismatches in ribosomal RNA.

Gautheret D, Konings D, Gutell RR.

J Mol Biol. 1994 Sep 9;242(1):1-8.

PMID:
8078068
13.

Computer analysis of potential stem structures of rRNA operons in various procaryote genomes.

Saito R, Ozawa Y, Kuzuno N, Tomita M.

Gene. 2000 Dec 23;259(1-2):217-22.

PMID:
11163979
14.

Structure and dynamics of ribosomal RNA.

Woodson SA, Leontis NB.

Curr Opin Struct Biol. 1998 Jun;8(3):294-300. Review.

PMID:
9666324
15.

Is there a special function for U.G basepairs in ribosomal RNA?

van Knippenberg PH, Formenoy LJ, Heus HA.

Biochim Biophys Acta. 1990 Aug 27;1050(1-3):14-7.

PMID:
2207138
16.

NMR structure and Mg2+ binding of an RNA segment that underlies the L7/L12 stalk in the E.coli 50S ribosomal subunit.

Zhao Q, Nagaswamy U, Lee H, Xia Y, Huang HC, Gao X, Fox GE.

Nucleic Acids Res. 2005 Jun 6;33(10):3145-53. Print 2005.

17.

RNA tertiary interactions in the large ribosomal subunit: the A-minor motif.

Nissen P, Ippolito JA, Ban N, Moore PB, Steitz TA.

Proc Natl Acad Sci U S A. 2001 Apr 24;98(9):4899-903. Epub 2001 Apr 10.

18.

The NMR structure of an internal loop from 23S ribosomal RNA differs from its structure in crystals of 50s ribosomal subunits.

Shankar N, Kennedy SD, Chen G, Krugh TR, Turner DH.

Biochemistry. 2006 Oct 3;45(39):11776-89.

19.

G.U base pairing motifs in ribosomal RNA.

Gautheret D, Konings D, Gutell RR.

RNA. 1995 Oct;1(8):807-14.

20.
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