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Results: 1 to 20 of 66

1.

Development of a system for the inference of large scale genetic networks.

Maki Y, Tominaga D, Okamoto M, Watanabe S, Eguchi Y.

Pac Symp Biocomput. 2001:446-58.

PMID:
11262963
[PubMed - indexed for MEDLINE]
2.

Inference of Boolean networks under constraint on bidirectional gene relationships.

Vahedi G, Ivanov IV, Dougherty ER.

IET Syst Biol. 2009 May;3(3):191-202. doi: 10.1049/iet-syb.2007.0070.

PMID:
19449979
[PubMed - indexed for MEDLINE]
3.

Inference of gene regulatory networks using boolean-network inference methods.

Hickman GJ, Hodgman TC.

J Bioinform Comput Biol. 2009 Dec;7(6):1013-29. Review.

PMID:
20014476
[PubMed - indexed for MEDLINE]
4.

Intervention in a family of Boolean networks.

Choudhary A, Datta A, Bittner ML, Dougherty ER.

Bioinformatics. 2006 Jan 15;22(2):226-32. Epub 2005 Nov 12.

PMID:
16286362
[PubMed - indexed for MEDLINE]
Free Article
5.

A Boolean algorithm for reconstructing the structure of regulatory networks.

Mehra S, Hu WS, Karypis G.

Metab Eng. 2004 Oct;6(4):326-39.

PMID:
15491862
[PubMed - indexed for MEDLINE]
6.

Inferring qualitative relations in genetic networks and metabolic pathways.

Akutsu T, Miyano S, Kuhara S.

Bioinformatics. 2000 Aug;16(8):727-34.

PMID:
11099258
[PubMed - indexed for MEDLINE]
Free Article
7.

A gene network inference method from continuous-value gene expression data of wild-type and mutants.

Kyoda KM, Morohashi M, Onami S, Kitano H.

Genome Inform Ser Workshop Genome Inform. 2000;11:196-204.

PMID:
11700600
[PubMed - indexed for MEDLINE]
8.

A new multiple regression approach for the construction of genetic regulatory networks.

Zhang SQ, Ching WK, Tsing NK, Leung HY, Guo D.

Artif Intell Med. 2010 Feb-Mar;48(2-3):153-60. doi: 10.1016/j.artmed.2009.11.001. Epub 2009 Dec 5.

PMID:
19963359
[PubMed - indexed for MEDLINE]
9.

Gene expression complex networks: synthesis, identification, and analysis.

Lopes FM, Cesar RM, Costa Lda F.

J Comput Biol. 2011 Oct;18(10):1353-67. doi: 10.1089/cmb.2010.0118. Epub 2011 May 6.

PMID:
21548810
[PubMed - indexed for MEDLINE]
10.

Inference of scale-free networks from gene expression time series.

Daisuke T, Horton P.

J Bioinform Comput Biol. 2006 Apr;4(2):503-14.

PMID:
16819798
[PubMed - indexed for MEDLINE]
11.

Inference of genetic regulatory networks with recurrent neural network models using particle swarm optimization.

Xu R, Wunsch Ii D, Frank R.

IEEE/ACM Trans Comput Biol Bioinform. 2007 Oct-Dec;4(4):681-92.

PMID:
17975278
[PubMed - indexed for MEDLINE]
12.

Weighted-LASSO for structured network inference from time course data.

Charbonnier C, Chiquet J, Ambroise C.

Stat Appl Genet Mol Biol. 2010;9:Article 15. doi: 10.2202/1544-6115.1519. Epub 2010 Feb 1.

PMID:
20196750
[PubMed - indexed for MEDLINE]
13.

Influence of network topology and data collection on network inference.

Smith VA, Jarvis ED, Hartemink AJ.

Pac Symp Biocomput. 2003:164-75.

PMID:
12603026
[PubMed - indexed for MEDLINE]
14.

Algorithms for identifying Boolean networks and related biological networks based on matrix multiplication and fingerprint function.

Akutsu T, Miyano S, Kuhara S.

J Comput Biol. 2000;7(3-4):331-43.

PMID:
11108466
[PubMed - indexed for MEDLINE]
15.

Discovery of regulatory interactions through perturbation: inference and experimental design.

Ideker TE, Thorsson V, Karp RM.

Pac Symp Biocomput. 2000:305-16.

PMID:
10902179
[PubMed - indexed for MEDLINE]
16.

Network legos: building blocks of cellular wiring diagrams.

Murali TM, Rivera CG.

J Comput Biol. 2008 Sep;15(7):829-44. doi: 10.1089/cmb.2007.0139.

PMID:
18707557
[PubMed - indexed for MEDLINE]
17.

Inferring Boolean networks with perturbation from sparse gene expression data: a general model applied to the interferon regulatory network.

Yu L, Watterson S, Marshall S, Ghazal P.

Mol Biosyst. 2008 Oct;4(10):1024-30. doi: 10.1039/b804649b. Epub 2008 Aug 26.

PMID:
19082142
[PubMed - indexed for MEDLINE]
18.

Large-scale dynamic gene regulatory network inference combining differential equation models with local dynamic Bayesian network analysis.

Li Z, Li P, Krishnan A, Liu J.

Bioinformatics. 2011 Oct 1;27(19):2686-91. doi: 10.1093/bioinformatics/btr454. Epub 2011 Aug 4.

PMID:
21816876
[PubMed - indexed for MEDLINE]
Free Article
19.

Statistical inference of transcriptional module-based gene networks from time course gene expression profiles by using state space models.

Hirose O, Yoshida R, Imoto S, Yamaguchi R, Higuchi T, Charnock-Jones DS, Print C, Miyano S.

Bioinformatics. 2008 Apr 1;24(7):932-42. doi: 10.1093/bioinformatics/btm639. Epub 2008 Feb 21.

PMID:
18292116
[PubMed - indexed for MEDLINE]
Free Article
20.

Inference of large-scale gene regulatory networks using regression-based network approach.

Kim H, Lee JK, Park T.

J Bioinform Comput Biol. 2009 Aug;7(4):717-35.

PMID:
19634200
[PubMed - indexed for MEDLINE]

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