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Similar articles for PubMed (Select 11125131)

1.

The University of Minnesota Biocatalysis/Biodegradation Database: emphasizing enzymes.

Ellis LB, Hershberger CD, Bryan EM, Wackett LP.

Nucleic Acids Res. 2001 Jan 1;29(1):340-3.

2.
3.

The University of Minnesota Biocatalysis/Biodegradation Database: the first decade.

Ellis LB, Roe D, Wackett LP.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D517-21.

4.

The University of Minnesota Biocatalysis/Biodegradation Database: improving public access.

Gao J, Ellis LB, Wackett LP.

Nucleic Acids Res. 2010 Jan;38(Database issue):D488-91. doi: 10.1093/nar/gkp771. Epub 2009 Sep 18.

5.

The University of Minnesota Biocatalysis/Biodegradation Database: post-genomic data mining.

Ellis LB, Hou BK, Kang W, Wackett LP.

Nucleic Acids Res. 2003 Jan 1;31(1):262-5.

6.

Representing metabolic pathway information: an object-oriented approach.

Ellis LB, Speedie SM, McLeish R.

Bioinformatics. 1998;14(9):803-6.

7.

Microbial pathway prediction: a functional group approach.

Hou BK, Wackett LP, Ellis LB.

J Chem Inf Comput Sci. 2003 May-Jun;43(3):1051-7.

PMID:
12767164
8.

Encoding microbial metabolic logic: predicting biodegradation.

Hou BK, Ellis LB, Wackett LP.

J Ind Microbiol Biotechnol. 2004 Jul;31(6):261-72. Epub 2004 Jul 10.

PMID:
15248088
9.

The University of Minnesota Biocatalysis/Biodegradation database: microorganisms, genomics and prediction.

Ellis LB, Hershberger CD, Wackett LP.

Nucleic Acids Res. 2000 Jan 1;28(1):377-9.

10.

BSD: the Biodegradative Strain Database.

Urbance JW, Cole J, Saxman P, Tiedje JM.

Nucleic Acids Res. 2003 Jan 1;31(1):152-5.

11.

Production of bulk chemicals via novel metabolic pathways in microorganisms.

Shin JH, Kim HU, Kim DI, Lee SY.

Biotechnol Adv. 2013 Nov;31(6):925-35. doi: 10.1016/j.biotechadv.2012.12.008. Epub 2012 Dec 29.

PMID:
23280013
12.

The University of Minnesota pathway prediction system: predicting metabolic logic.

Ellis LB, Gao J, Fenner K, Wackett LP.

Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W427-32. doi: 10.1093/nar/gkn315. Epub 2008 Jun 4.

13.

Integration of bioinformatics to biodegradation.

Arora PK, Bae H.

Biol Proced Online. 2014 Apr 27;16:8. doi: 10.1186/1480-9222-16-8. eCollection 2014. Review.

14.

Novel biocatalysis by database mining.

Wackett LP.

Curr Opin Biotechnol. 2004 Aug;15(4):280-4. Review.

PMID:
15296925
15.

Use of the University of Minnesota Biocatalysis/Biodegradation Database for study of microbial degradation.

Ellis LB, Wackett LP.

Microb Inform Exp. 2012 Jan 4;2(1):1. doi: 10.1186/2042-5783-2-1.

16.

MetaCyc: a multiorganism database of metabolic pathways and enzymes.

Caspi R, Foerster H, Fulcher CA, Hopkinson R, Ingraham J, Kaipa P, Krummenacker M, Paley S, Pick J, Rhee SY, Tissier C, Zhang P, Karp PD.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D511-6.

17.

LIGAND database for enzymes, compounds and reactions.

Goto S, Nishioka T, Kanehisa M.

Nucleic Acids Res. 1999 Jan 1;27(1):377-9.

18.

The organization of the microbial biodegradation network from a systems-biology perspective.

Pazos F, Valencia A, De Lorenzo V.

EMBO Rep. 2003 Oct;4(10):994-9. Epub 2003 Sep 5.

19.

IntEnz, the integrated relational enzyme database.

Fleischmann A, Darsow M, Degtyarenko K, Fleischmann W, Boyce S, Axelsen KB, Bairoch A, Schomburg D, Tipton KF, Apweiler R.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D434-7.

20.

Data-driven extraction of relative reasoning rules to limit combinatorial explosion in biodegradation pathway prediction.

Fenner K, Gao J, Kramer S, Ellis L, Wackett L.

Bioinformatics. 2008 Sep 15;24(18):2079-85. doi: 10.1093/bioinformatics/btn378. Epub 2008 Jul 19.

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