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Results: 1 to 20 of 283

1.

HMMSTR: a hidden Markov model for local sequence-structure correlations in proteins.

Bystroff C, Thorsson V, Baker D.

J Mol Biol. 2000 Aug 4;301(1):173-90.

PMID:
10926500
[PubMed - indexed for MEDLINE]
2.

Protein topology recognition from secondary structure sequences: application of the hidden Markov models to the alpha class proteins.

Di Francesco V, Garnier J, Munson PJ.

J Mol Biol. 1997 Mar 28;267(2):446-63.

PMID:
9096237
[PubMed - indexed for MEDLINE]
3.

Fold recognition and ab initio structure predictions using hidden Markov models and beta-strand pair potentials.

Hubbard TJ, Park J.

Proteins. 1995 Nov;23(3):398-402.

PMID:
8710832
[PubMed - indexed for MEDLINE]
4.

Sequence-based protein structure prediction using a reduced state-space hidden Markov model.

Lampros C, Costas Papaloukas, Exarchos TP, Yorgos Goletsis, Fotiadis DI.

Comput Biol Med. 2007 Sep;37(9):1211-24. Epub 2006 Dec 11.

PMID:
17161834
[PubMed - indexed for MEDLINE]
5.

Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure.

Gough J, Karplus K, Hughey R, Chothia C.

J Mol Biol. 2001 Nov 2;313(4):903-19.

PMID:
11697912
[PubMed - indexed for MEDLINE]
6.

FORESST: fold recognition from secondary structure predictions of proteins.

Di Francesco V, Munson PJ, Garnier J.

Bioinformatics. 1999 Feb;15(2):131-40.

PMID:
10089198
[PubMed - indexed for MEDLINE]
Free Article
7.

Five hierarchical levels of sequence-structure correlation in proteins.

Bystroff C, Shao Y, Yuan X.

Appl Bioinformatics. 2004;3(2-3):97-104. Review.

PMID:
15693735
[PubMed - indexed for MEDLINE]
8.

Remote homolog detection using local sequence-structure correlations.

Hou Y, Hsu W, Lee ML, Bystroff C.

Proteins. 2004 Nov 15;57(3):518-30.

PMID:
15382242
[PubMed - indexed for MEDLINE]
9.

Combined prediction of transmembrane topology and signal peptide of beta-barrel proteins: using a hidden Markov model and genetic algorithms.

Zou L, Wang Z, Wang Y, Hu F.

Comput Biol Med. 2010 Jul;40(7):621-8. doi: 10.1016/j.compbiomed.2010.04.006. Epub 2010 May 21.

PMID:
20488436
[PubMed - indexed for MEDLINE]
10.

Hidden Markov Models for prediction of protein features.

Bystroff C, Krogh A.

Methods Mol Biol. 2008;413:173-98. Review.

PMID:
18075166
[PubMed - indexed for MEDLINE]
11.

Scoring hidden Markov models to discriminate beta-barrel membrane proteins.

Deng Y, Liu Q, Li YX.

Comput Biol Chem. 2004 Jul;28(3):189-94.

PMID:
15261149
[PubMed - indexed for MEDLINE]
12.

Enhanced protein fold recognition using a structural alphabet.

Deschavanne P, Tufféry P.

Proteins. 2009 Jul;76(1):129-37. doi: 10.1002/prot.22324.

PMID:
19089985
[PubMed - indexed for MEDLINE]
13.

Incorporating global information into secondary structure prediction with hidden Markov models of protein folds.

Di Francesco V, McQueen P, Garnier J, Munson PJ.

Proc Int Conf Intell Syst Mol Biol. 1997;5:100-3.

PMID:
9322022
[PubMed - indexed for MEDLINE]
14.

Evaluation of methods for predicting the topology of beta-barrel outer membrane proteins and a consensus prediction method.

Bagos PG, Liakopoulos TD, Hamodrakas SJ.

BMC Bioinformatics. 2005 Jan 12;6:7.

PMID:
15647112
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Hidden Markov models that use predicted local structure for fold recognition: alphabets of backbone geometry.

Karchin R, Cline M, Mandel-Gutfreund Y, Karplus K.

Proteins. 2003 Jun 1;51(4):504-14.

PMID:
12784210
[PubMed - indexed for MEDLINE]
16.

Prediction of local structure in proteins using a library of sequence-structure motifs.

Bystroff C, Baker D.

J Mol Biol. 1998 Aug 21;281(3):565-77.

PMID:
9698570
[PubMed - indexed for MEDLINE]
17.

Predicting protein structure using hidden Markov models.

Karplus K, Sjölander K, Barrett C, Cline M, Haussler D, Hughey R, Holm L, Sander C.

Proteins. 1997;Suppl 1:134-9.

PMID:
9485505
[PubMed - indexed for MEDLINE]
18.

A framework for direct locating and conformational sampling of protein structural motifs.

Yu J, Xiang L, Zhang W.

Protein Pept Lett. 2011 May;18(5):488-97.

PMID:
21534928
[PubMed - indexed for MEDLINE]
19.

Hidden Markov model approach for identifying the modular framework of the protein backbone.

Camproux AC, Tuffery P, Chevrolat JP, Boisvieux JF, Hazout S.

Protein Eng. 1999 Dec;12(12):1063-73.

PMID:
10611400
[PubMed - indexed for MEDLINE]
Free Article
20.

Strand-loop-strand motifs: prediction of hairpins and diverging turns in proteins.

Kuhn M, Meiler J, Baker D.

Proteins. 2004 Feb 1;54(2):282-8.

PMID:
14696190
[PubMed - indexed for MEDLINE]

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