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Items: 1 to 20 of 144


The COG database: a tool for genome-scale analysis of protein functions and evolution.

Tatusov RL, Galperin MY, Natale DA, Koonin EV.

Nucleic Acids Res. 2000 Jan 1;28(1):33-6.


The COG database: new developments in phylogenetic classification of proteins from complete genomes.

Tatusov RL, Natale DA, Garkavtsev IV, Tatusova TA, Shankavaram UT, Rao BS, Kiryutin B, Galperin MY, Fedorova ND, Koonin EV.

Nucleic Acids Res. 2001 Jan 1;29(1):22-8.


Clusters of orthologous genes for 41 archaeal genomes and implications for evolutionary genomics of archaea.

Makarova KS, Sorokin AV, Novichkov PS, Wolf YI, Koonin EV.

Biol Direct. 2007 Nov 27;2:33.


The COG database: an updated version includes eukaryotes.

Tatusov RL, Fedorova ND, Jackson JD, Jacobs AR, Kiryutin B, Koonin EV, Krylov DM, Mazumder R, Mekhedov SL, Nikolskaya AN, Rao BS, Smirnov S, Sverdlov AV, Vasudevan S, Wolf YI, Yin JJ, Natale DA.

BMC Bioinformatics. 2003 Sep 11;4:41. Epub 2003 Sep 11.


A Web-based classification system of DNA-binding protein families.

Karmirantzou M, Hamodrakas SJ.

Protein Eng. 2001 Jul;14(7):465-72.


Towards understanding the first genome sequence of a crenarchaeon by genome annotation using clusters of orthologous groups of proteins (COGs).

Natale DA, Shankavaram UT, Galperin MY, Wolf YI, Aravind L, Koonin EV.

Genome Biol. 2000;1(5):RESEARCH0009. Epub 2000 Nov 6.


Complete genomes in WWW Entrez: data representation and analysis.

Tatusova TA, Karsch-Mizrachi I, Ostell JA.

Bioinformatics. 1999 Jul-Aug;15(7-8):536-43.


Updated clusters of orthologous genes for Archaea: a complex ancestor of the Archaea and the byways of horizontal gene transfer.

Wolf YI, Makarova KS, Yutin N, Koonin EV.

Biol Direct. 2012 Dec 14;7:46. doi: 10.1186/1745-6150-7-46.


Using the COG database to improve gene recognition in complete genomes.

Natale DA, Galperin MY, Tatusov RL, Koonin EV.

Genetica. 2000;108(1):9-17.


Expanded microbial genome coverage and improved protein family annotation in the COG database.

Galperin MY, Makarova KS, Wolf YI, Koonin EV.

Nucleic Acids Res. 2015 Jan;43(Database issue):D261-9. doi: 10.1093/nar/gku1223. Epub 2014 Nov 26.


A genomic perspective on protein families.

Tatusov RL, Koonin EV, Lipman DJ.

Science. 1997 Oct 24;278(5338):631-7. Review.


Genome trees constructed using five different approaches suggest new major bacterial clades.

Wolf YI, Rogozin IB, Grishin NV, Tatusov RL, Koonin EV.

BMC Evol Biol. 2001 Oct 20;1:8.


A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm.

Podell S, Gaasterland T, Allen EE.

BMC Bioinformatics. 2008 Oct 7;9:419. doi: 10.1186/1471-2105-9-419.


Genomic BLAST: custom-defined virtual databases for complete and unfinished genomes.

Cummings L, Riley L, Black L, Souvorov A, Resenchuk S, Dondoshansky I, Tatusova T.

FEMS Microbiol Lett. 2002 Nov 5;216(2):133-8.


EMGLib: the enhanced microbial genomes library (update 2000).

Perrière G, Bessières P, Labedan B.

Nucleic Acids Res. 2000 Jan 1;28(1):68-71.

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