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Results: 1 to 20 of 79

1.

Genomic signature: characterization and classification of species assessed by chaos game representation of sequences.

Deschavanne PJ, Giron A, Vilain J, Fagot G, Fertil B.

Mol Biol Evol. 1999 Oct;16(10):1391-9.

PMID:
10563018
[PubMed - indexed for MEDLINE]
Free Article
2.

The spectrum of genomic signatures: from dinucleotides to chaos game representation.

Wang Y, Hill K, Singh S, Kari L.

Gene. 2005 Feb 14;346:173-85.

PMID:
15716010
[PubMed - indexed for MEDLINE]
3.

Entropic profiles of DNA sequences through chaos-game-derived images.

Oliver JL, Bernaola-Galván P, Guerrero-García J, Román-Roldán R.

J Theor Biol. 1993 Feb 21;160(4):457-70.

PMID:
8501918
[PubMed - indexed for MEDLINE]
4.

Phylogenetic signals in DNA composition: limitations and prospects.

Mrázek J.

Mol Biol Evol. 2009 May;26(5):1163-9. doi: 10.1093/molbev/msp032. Epub 2009 Feb 20.

PMID:
19233962
[PubMed - indexed for MEDLINE]
Free Article
5.

[Multifractal analysis of genomes sequences' CGR graph].

Fu W, Wang Y, Lu D.

Sheng Wu Yi Xue Gong Cheng Xue Za Zhi. 2007 Jun;24(3):522-5. Chinese.

PMID:
17713253
[PubMed - indexed for MEDLINE]
6.

Mathematical characterization of Chaos Game Representation. New algorithms for nucleotide sequence analysis.

Dutta C, Das J.

J Mol Biol. 1992 Dec 5;228(3):715-9.

PMID:
1469709
[PubMed - indexed for MEDLINE]
7.

Quantifying the species-specificity in genomic signatures, synonymous codon choice, amino acid usage and G+C content.

Sandberg R, Bränden CI, Ernberg I, Cöster J.

Gene. 2003 Jun 5;311:35-42.

PMID:
12853136
[PubMed - indexed for MEDLINE]
8.
9.

Self-Organizing Map (SOM) unveils and visualizes hidden sequence characteristics of a wide range of eukaryote genomes.

Abe T, Sugawara H, Kanaya S, Kinouchi M, Ikemura T.

Gene. 2006 Jan 3;365:27-34. Epub 2005 Dec 20.

PMID:
16364569
[PubMed - indexed for MEDLINE]
10.

Vestige: maximum likelihood phylogenetic footprinting.

Wakefield MJ, Maxwell P, Huttley GA.

BMC Bioinformatics. 2005 May 29;6:130.

PMID:
15921531
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Analysis of common k-mers for whole genome sequences using SSB-tree.

Choi JH, Cho HG.

Genome Inform. 2002;13:30-41.

PMID:
14571372
[PubMed - indexed for MEDLINE]
12.

Chaos game representation of gene structure.

Jeffrey HJ.

Nucleic Acids Res. 1990 Apr 25;18(8):2163-70.

PMID:
2336393
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Chaos game representation of protein sequences based on the detailed HP model and their multifractal and correlation analyses.

Yu ZG, Anh V, Lau KS.

J Theor Biol. 2004 Feb 7;226(3):341-8.

PMID:
14643648
[PubMed - indexed for MEDLINE]
14.

A genomic schism in birds revealed by phylogenetic analysis of DNA strings.

Edwards SV, Fertil B, Giron A, Deschavanne PJ.

Syst Biol. 2002 Aug;51(4):599-613.

PMID:
12228002
[PubMed - indexed for MEDLINE]
15.

Novel phylogenetic studies of genomic sequence fragments derived from uncultured microbe mixtures in environmental and clinical samples.

Abe T, Sugawara H, Kinouchi M, Kanaya S, Ikemura T.

DNA Res. 2005;12(5):281-90. Epub 2006 Jan 10.

PMID:
16769690
[PubMed - indexed for MEDLINE]
Free Article
16.

Analysis of genomic sequences by Chaos Game Representation.

Almeida JS, Carriço JA, Maretzek A, Noble PA, Fletcher M.

Bioinformatics. 2001 May;17(5):429-37.

PMID:
11331237
[PubMed - indexed for MEDLINE]
Free Article
17.

A phylogenetic analysis of the brassicales clade based on an alignment-free sequence comparison method.

Hatje K, Kollmar M.

Front Plant Sci. 2012 Aug 29;3:192. doi: 10.3389/fpls.2012.00192. eCollection 2012.

PMID:
22952468
[PubMed]
Free PMC Article
18.

Genome structures embossed by oligonucleotide-stickiness.

Nishigaki K, Saito A.

Bioinformatics. 2002 Sep;18(9):1153-61.

PMID:
12217906
[PubMed - indexed for MEDLINE]
Free Article
19.

A measure of DNA sequence dissimilarity based on Mahalanobis distance between frequencies of words.

Wu TJ, Burke JP, Davison DB.

Biometrics. 1997 Dec;53(4):1431-9.

PMID:
9423258
[PubMed - indexed for MEDLINE]
20.

Entropic Profiler - detection of conservation in genomes using information theory.

Fernandes F, Freitas AT, Almeida JS, Vinga S.

BMC Res Notes. 2009 May 5;2:72. doi: 10.1186/1756-0500-2-72.

PMID:
19416538
[PubMed]
Free PMC Article

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