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Results: 1 to 20 of 85

1.

Simulation of B Cell Affinity Maturation Explains Enhanced Antibody Cross-Reactivity Induced by the Polyvalent Malaria Vaccine AMA1.

Chaudhury S, Reifman J, Wallqvist A.

J Immunol. 2014 Sep 1;193(5):2073-86. doi: 10.4049/jimmunol.1401054. Epub 2014 Jul 30.

PMID:
25080483
[PubMed - in process]
Free PMC Article
2.

Human APOBEC3 induced mutation of human immunodeficiency virus type-1 contributes to adaptation and evolution in natural infection.

Kim EY, Lorenzo-Redondo R, Little SJ, Chung YS, Phalora PK, Maljkovic Berry I, Archer J, Penugonda S, Fischer W, Richman DD, Bhattacharya T, Malim MH, Wolinsky SM.

PLoS Pathog. 2014 Jul 31;10(7):e1004281. doi: 10.1371/journal.ppat.1004281. eCollection 2014 Jul.

PMID:
25080100
[PubMed - in process]
Free PMC Article
3.

Reversion and T cell escape mutations compensate the fitness loss of a CD8+ T cell escape mutant in their cognate transmitted/founder virus.

Song H, Hora B, Bhattacharya T, Goonetilleke N, Liu MK, Wiehe K, Li H, Iyer SS, McMichael AJ, Perelson AS, Gao F.

PLoS One. 2014 Jul 16;9(7):e102734. doi: 10.1371/journal.pone.0102734. eCollection 2014.

PMID:
25028937
[PubMed - in process]
Free PMC Article
4.

Transcytosis of HIV-1 through vaginal epithelial cells is dependent on trafficking to the endocytic recycling pathway.

Kinlock BL, Wang Y, Turner TM, Wang C, Liu B.

PLoS One. 2014 May 15;9(5):e96760. doi: 10.1371/journal.pone.0096760. eCollection 2014.

PMID:
24830293
[PubMed - in process]
Free PMC Article
5.

Mathematical modeling of escape of HIV from cytotoxic T lymphocyte responses.

Ganusov VV, Neher RA, Perelson AS.

J Stat Mech. 2013 Jan 1;2013:P01010.

PMID:
24660019
[PubMed]
Free PMC Article
6.

Quantitative characterization of defective virus emergence by deep sequencing.

Timm C, Akpinar F, Yin J.

J Virol. 2014 Mar;88(5):2623-32. doi: 10.1128/JVI.02675-13. Epub 2013 Dec 18.

PMID:
24352442
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

HIV-1 transmission during early infection in men who have sex with men: a phylodynamic analysis.

Volz EM, Ionides E, Romero-Severson EO, Brandt MG, Mokotoff E, Koopman JS.

PLoS Med. 2013 Dec;10(12):e1001568; discussion e1001568. doi: 10.1371/journal.pmed.1001568. Epub 2013 Dec 10.

PMID:
24339751
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Can non-lytic CD8+ T cells drive HIV-1 escape?

Seich Al Basatena NK, Chatzimichalis K, Graw F, Frost SD, Regoes RR, Asquith B.

PLoS Pathog. 2013;9(11):e1003656. doi: 10.1371/journal.ppat.1003656. Epub 2013 Nov 14.

PMID:
24244151
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Properties of MHC class I presented peptides that enhance immunogenicity.

Calis JJ, Maybeno M, Greenbaum JA, Weiskopf D, De Silva AD, Sette A, Keşmir C, Peters B.

PLoS Comput Biol. 2013 Oct;9(10):e1003266. doi: 10.1371/journal.pcbi.1003266. Epub 2013 Oct 24.

PMID:
24204222
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Improved detection of rare HIV-1 variants using 454 pyrosequencing.

Larsen BB, Chen L, Maust BS, Kim M, Zhao H, Deng W, Westfall D, Beck I, Frenkel LM, Mullins JI.

PLoS One. 2013 Oct 2;8(10):e76502. doi: 10.1371/journal.pone.0076502. eCollection 2013.

PMID:
24098517
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Inferring HIV Escape Rates from Multi-Locus Genotype Data.

Kessinger TA, Perelson AS, Neher RA.

Front Immunol. 2013 Sep 3;4:252. doi: 10.3389/fimmu.2013.00252. eCollection 2013.

PMID:
24027569
[PubMed]
Free PMC Article
12.

Modeling the within-host dynamics of HIV infection.

Perelson AS, Ribeiro RM.

BMC Biol. 2013 Sep 3;11:96. doi: 10.1186/1741-7007-11-96. Review.

PMID:
24020860
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Quantifying selection against synonymous mutations in HIV-1 env evolution.

Zanini F, Neher RA.

J Virol. 2013 Nov;87(21):11843-50. doi: 10.1128/JVI.01529-13. Epub 2013 Aug 28.

PMID:
23986591
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

A multiple-alignment based primer design algorithm for genetically highly variable DNA targets.

Brodin J, Krishnamoorthy M, Athreya G, Fischer W, Hraber P, Gleasner C, Green L, Korber B, Leitner T.

BMC Bioinformatics. 2013 Aug 21;14:255. doi: 10.1186/1471-2105-14-255.

PMID:
23965160
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Limited nucleotide changes in the Rev response element (RRE) during HIV-1 infection alter overall Rev-RRE activity and Rev multimerization.

Sloan EA, Kearney MF, Gray LR, Anastos K, Daar ES, Margolick J, Maldarelli F, Hammarskjold ML, Rekosh D.

J Virol. 2013 Oct;87(20):11173-86. doi: 10.1128/JVI.01392-13. Epub 2013 Aug 7.

PMID:
23926352
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Programmed death-1 is a marker for abnormal distribution of naive/memory T cell subsets in HIV-1 infection.

Breton G, Chomont N, Takata H, Fromentin R, Ahlers J, Filali-Mouhim A, Riou C, Boulassel MR, Routy JP, Yassine-Diab B, Sékaly RP.

J Immunol. 2013 Sep 1;191(5):2194-204. doi: 10.4049/jimmunol.1200646. Epub 2013 Aug 5.

PMID:
23918986
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

A mechanistic understanding of allosteric immune escape pathways in the HIV-1 envelope glycoprotein.

Sethi A, Tian J, Derdeyn CA, Korber B, Gnanakaran S.

PLoS Comput Biol. 2013;9(5):e1003046. doi: 10.1371/journal.pcbi.1003046. Epub 2013 May 16.

PMID:
23696718
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Acute phase CD8+ T lymphocytes against alternate reading frame epitopes select for rapid viral escape during SIV infection.

Walsh AD, Bimber BN, Das A, Piaskowski SM, Rakasz EG, Bean AT, Mudd PA, Ericsen AJ, Wilson NA, Hughes AL, O'Connor DH, Maness NJ.

PLoS One. 2013 May 6;8(5):e61383. doi: 10.1371/journal.pone.0061383. Print 2013.

PMID:
23671565
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Computational inference methods for selective sweeps arising in acute HIV infection.

Leviyang S.

Genetics. 2013 Jul;194(3):737-52. doi: 10.1534/genetics.113.150862. Epub 2013 May 11.

PMID:
23666940
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Using nonhuman primates to model HIV transmission.

Fennessey CM, Keele BF.

Curr Opin HIV AIDS. 2013 Jul;8(4):280-7. doi: 10.1097/COH.0b013e328361cfff. Review.

PMID:
23666391
[PubMed - indexed for MEDLINE]
Free PMC Article

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