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Fungal taxonomy and sequence-based nomenclature.
Lücking R, Aime MC, Robbertse B, Miller AN, Aoki T, Ariyawansa HA, Cardinali G, Crous PW, Druzhinina IS, Geiser DM, Hawksworth DL, Hyde KD, Irinyi L, Jeewon R, Johnston PR, Kirk PM, Malosso E, May TW, Meyer W, Nilsson HR, Öpik M, Robert V, Stadler M, Thines M, Vu D, Yurkov AM, Zhang N, Schoch CL. Lücking R, et al. Nat Microbiol. 2021 May;6(5):540-548. doi: 10.1038/s41564-021-00888-x. Epub 2021 Apr 26. Nat Microbiol. 2021. PMID: 33903746 Free PMC article. Review.
Sequence-based classification and identification of Fungi.
Hibbett D, Abarenkov K, Kõljalg U, Öpik M, Chai B, Cole J, Wang Q, Crous P, Robert V, Helgason T, Herr JR, Kirk P, Lueschow S, O'Donnell K, Nilsson RH, Oono R, Schoch C, Smyth C, Walker DM, Porras-Alfaro A, Taylor JW, Geiser DM. Hibbett D, et al. Mycologia. 2016 Nov/Dec;108(6):1049-1068. doi: 10.3852/16-130. Mycologia. 2016. PMID: 27760854 Review.
A computational approach to study functional monomer-protein molecular interactions to optimize protein molecular imprinting.
Boroznjak R, Reut J, Tretjakov A, Lomaka A, Öpik A, Syritski V. Boroznjak R, et al. J Mol Recognit. 2017 Oct;30(10). doi: 10.1002/jmr.2635. Epub 2017 Apr 26. J Mol Recognit. 2017. PMID: 28444792
It was revealed that mPD was arranged more uniformly around IgG participating in multiple H-bond interactions with its polar residues and, therefore, could be considered as more advantageous for synthesis of a MIP for IgG recognition (IgG-MIP). ...
It was revealed that mPD was arranged more uniformly around IgG participating in multiple H-bond interactions with its polar residues …
High diversity of arbuscular mycorrhizal fungi in a boreal herb-rich coniferous forest.
Öpik M, Moora M, Zobel M, Saks Ü, Wheatley R, Wright F, Daniell T. Öpik M, et al. New Phytol. 2008;179(3):867-876. doi: 10.1111/j.1469-8137.2008.02515.x. Epub 2008 Jun 5. New Phytol. 2008. PMID: 18537886 Free article.
Sequence groups related to Glomus intraradices were most common (MO-G3 and MO-G13). Samples of H. nobilis were colonized by more AM fungal taxa (3.68 +/- 0.31) than those of O. acetosella (2.69 +/- 0.34), but did not differ significantly in this respect from those of F. ve …
Sequence groups related to Glomus intraradices were most common (MO-G3 and MO-G13). Samples of H. nobilis were colonized by more AM f …
Contact-Angle Hysteresis Caused by a Random Distribution of Weak Heterogeneities on a Solid Surface.
Öpik U. Öpik U. J Colloid Interface Sci. 2000 Mar 15;223(2):143-166. doi: 10.1006/jcis.1999.6637. J Colloid Interface Sci. 2000. PMID: 10700398
It is found that the critical deviation of the contact angle from theta(0) is, apart from a slowly varying logarithmic factor, proportional to H(2)rho(s), where H is a measure of the amplitude of the surface irregularities and rho(s) is the surface density (i.e., nu …
It is found that the critical deviation of the contact angle from theta(0) is, apart from a slowly varying logarithmic factor, proportional …